Influenza targets

ABSTRACT

The present invention relates to a pharmaceutical composition comprising an inhibitor of influenza virus replication. Yet another aspect is a screening method for identification of new targets for the prevention, alleviation or/and treatment of influenza.

CROSS REFERENCE TO RELATED APPLICATION

This application is a 35 U.S.C. 371 National Phase Entry Application from PCT/EP2010/070548, filed Dec. 22, 2010, which claims the benefit of European Patent Application No. 09015997.1 filed on Dec. 23, 2009, the disclosures of which are incorporated herein in their entirety by reference.

REFERENCE TO A SEQUENCE LISTING

The present application includes a Sequence Listing filed in electronic format. The Sequence Listing is entitled “2923-1157_ST25.txt” created on Sep. 7, 2012, and is 174,000 bytes in size. The information in the electronic format of the Sequence Listing is part of the present application and is incorporated herein by reference in its entirety.

The present invention relates to a pharmaceutical composition comprising an inhibitor of influenza virus replication. Yet another aspect is a screening method for identification of new targets for the prevention, alleviation or/and treatment of influenza.

In view of the threatening influenza pandemic, there is an acute need to develop and make available lastingly effective drugs. In Germany alone the annual occurrence of influenza causes between 5,000 and 20,000 deaths a year (source: Robert-Koch Institute). The recurring big influenza pandemics are especially feared. The first big pandemic, the so-called “Spanish Flu”, cost about 40 million lives in the years 1918-1919 including a high percentage of healthy, middle-aged people. A similar pandemic could be caused by the H5N1 influenza virus, which at the moment replicates mainly in birds, if acquired mutations enable the virus to be transmitted from person to person. The probability of a human pandemic has recently grown more acute with the spreading of bird flu (H5N1) worldwide and the infection of domestic animals. It is only a question of time until a highly pathogenic human influenza-recombinant emerges. More recently, a novel influenza virus variant has emerged, i.e. the influenza A (H1N1) ‘swine flu’ strain, posing an unpredictable pandemic threat. The methods available at the moment for prophylaxis or therapy of an influenza infection, such as vaccination with viral surface proteins or the use of antiviral drugs (neuraminidase inhibitors or ion channel blockers), have various disadvantages. Already at this early stage resistance is appearing against one of our most effective preparations (Tamiflu), which may make it unsuitable to contain a pandemic. A central problem in the use of vaccines and drugs against influenza is the variability of the pathogen. Up to now the development of effective vaccines has required accurate prediction of the pathogen variant. Drugs directed against viral components can rapidly lose their effectiveness because of mutations of the pathogen.

An area of research which has received little attention up to now is the identification of critical target structures in the host cell. Viruses are dependent on certain cellular proteins to be able to replicate within the host. The knowledge of such cellular factors that are essential for viral replication but dispensable (at least temporarily) for humans could lead to the development of novel drugs. Rough estimates predict about 500 genes in the human genome which are essential for viral multiplication. Of these, 10% at least are probably dispensable temporarily or even permanently for the human organism. Inhibition of these genes and their products, which in contrast to the viral targets are constant in their structure, would enable the development of a new generation of antiviral drugs in the shortest time. Inhibition of such gene products could overcome the development of viral escape mutants that are not longer sensitive to antiviral drugs.

It is the object of the present invention to provide screenings methods for compounds suitable for the prevention, alleviation or/and treatment of an influenza virus infection.

In the context of the present invention, it was surprisingly found that modulation (activation or inhibition) of particular genes leads to reduction of influenza virus replication. Tables 1, 2, 3 and 4 describe targets for the prevention, alleviation or/and treatment of an influenza virus infection.

Examples of genes which upon downregulation increase the influenza virus replication are described in Tables 1, 2, 3 and 4. Thus, by increasing expression or/and activity of these genes or/and gene products, the influenza virus replication can be reduced.

Examples of genes which upon downregulation decrease the influenza virus replication are also described in Tables 1, 2, 3 and 4. Thus, by decreasing expression or/and activity of these genes or/and gene products, the influenza virus replication can be reduced.

Subject of the present invention is thus a screening method covering different aspects related to influenza virus infection, in particular influenza virus replication. A first aspect of the present invention is a screening method for identification of a compound suitable for the prevention, alleviation or/and treatment of an influenza virus infection, comprising the steps

-   -   (a) providing a cell or/and a non-human organism capable of         being infected with an influenza virus and capable of expressing         a gene, wherein the gene or/and gene product thereof is capable         of modulating an influenza virus replication,     -   (b) contacting the cell or/and the organism of (a) with an         influenza virus and with a compound known to be capable of         modulating the expression or/and activity of the gene of (a)         or/and the gene product thereof,     -   (c) determining the amount of influenza virus produced by the         cell or/and the organism, and     -   (d) selecting a compound which reduces the amount of the         influenza virus produced by the cell or/and the organism.

The gene of (a) may be selected from genes listed in Table 1, Table 2, Table 3 or Table 4. Preferably, the gene of (a) is selected from Table 4.

The method of the present invention may comprise a cellular screening assay. A cellular screening assay includes the determination of the activity or/and expression of a gene of (a) or/and the gene product thereof. The screening assay may be performed in vivo or/and in vitro.

Another aspect of the present invention is a screening method for identification of a compound suitable for prevention, alleviation or/and treatment of an influenza virus infection, comprising the steps

-   -   (i) providing a cell or/and a non-human organism capable of         expressing a gene, wherein the gene or/and gene product thereof         is capable of modulating an influenza virus replication,     -   (ii) contacting a compound with the cell or/and the organism of         (i),     -   (iii) determining the amount or/and the activity of gene product         of the gene of (i), and     -   (iv) selecting a compound which modulates the amount or/and the         activity of the gene product of (i).

The gene of (i) may be selected from Table 1, Table 2, Table 3 and Table 4. Preferably, the gene of (i) is selected from Table 4.

The compound of (iv) may reduce the amount of the influenza virus produced by the cell or/and the organism.

“Modulation” in the context of the present invention may be “activation” or “inhibition”. Modulation of the expression of a gene may be downregulation or upregulation, in particular of transcription or/and translation. It can easily be determined by a skilled person if a gene is upregulated or down-regulated. In the context of the present invention, upregulation (activation) of gene expression may be an upregulation by a factor of at least 2, preferably at least 4. Downregulation (inhibition) in the context of the present invention may be a reduction of gene expression by a factor of at least 2, preferably at least 4. Most preferred is essentially complete inhibition of gene expression, e.g. by RNA interference.

Modulation of the activity of the gene may be decrease or increase of the activity. In the context of the present invention, “activity” of the gene or/and gene product includes transcription, translation, posttranslational modification, modulation of the activity of the gene or/and gene product. The activity may be modulated by ligand binding, which ligand may be an activator or inhibitor. “Inhibition of the activity” may be a decrease of activity of a gene or gene product by a factor of at least 2, preferably at least 4. “Inhibition of the activity” includes essentially complete inhibition of activity. “Activation of the activity” may be an increase of activity of a gene or gene product by a factor of at least 2, preferably at least 4.

The activity may also be modulated by an miRNA molecule, an shRNA molecule, an siRNA molecule, an antisense nucleic acid, a decoy nucleic acid or/and any other nucleic acid, as described herein. Modulation may also be performed by a small molecule, an antibody, an aptamer, or/and a spiegelmer (mirror image aptamer).

An activator of a gene identified by the method of the present invention may be suitable of reducing the amount of the influenza virus produced by a cell or/and an organism. In Tables 1, 2, 3 and 4, genes are described which upon inhibition (e.g. by siRNA) increase virus replication. Therefore, upon activation of these genes, virus replication may be reduced. In the tables, such genes are characterized by positive z-scores or/and by negative values of normalized percent inhibition (NPI).

An inhibitor of a gene identified by the method of the present invention is suitable of reducing the amount of the influenza virus produced by a cell or/and an organism. In Tables 1, 2, 3 and 4, genes are described which upon inhibition (e.g. by siRNA) decrease virus replication. In the tables, such genes are characterized by negative z-scores or/and by positive values of normalized percent inhibition (NPI).

Modulation may be performed by a single nucleic acid species or by a combination of nucleic acids comprising 2, 3 4, 5, 6 or even more different nucleic acid species, which may be selected from sequences of Tables 1, 2, 3, and 4 and fragments thereof. Preferred combinations are described in Table 4. It is also preferred that the combination modulates one gene, for instance selected from Tables 1, 2, 3, and 4. A combination of two nucleic acid species is preferred.

Modulation may be a knock-down performed by RNA interference. The nucleic acid or the combination of nucleic acid species may be an siRNA, which may comprise a sequence selected from the sequences of Tables 1, 2, 3, and 4 and fragments thereof. It is preferred that the combination knocks down one gene, for instance selected from Tables 1, 2, 3, and 4. A combination of two siRNA species is preferred.

In the context of the present invention, a “target” includes a nucleotide sequence in a gene or/and a genome, a nucleic acid, or/and a polypeptide which is involved in regulation of influenza virus replication in a host cell. The target may be directly or indirectly involved in regulation of influenza virus replication. In particular, a target is suitable for reduction of influenza virus replication, either by activation of the target or by inhibition of the target.

Examples of targets are genes and partial sequence of genes, such as regulatory sequences. The term “target” also includes a gene product such as RNA, in particular mRNA, tRNA, rRNA, miRNA, piRNA. A target may also include a polypeptide or/and a protein encoded by the target gene. Preferred gene products of a target gene are selected from mRNA, miRNA, polypeptide(s) and protein(s) encoded by the target gene. The most preferred gene product is a polypeptide or protein encoded by the target gene. A target protein or a target polypeptide may be posttranslationally modified or not.

“Gene product” of a gene as used herein includes RNA (in particular mRNA, tRNA, rRNA, miRNA and piRNA), a polypeptide or/and a protein encoded by said gene.

The cell employed in step (a) may be any cell capable of being infected with an influenza virus. Cell lines suitable for the production of an influenza virus are known. Preferably the cell is a mammalian cell or an avian cell. Also preferred is a human cell. Also preferred is an epithelial cell, such as a lung epithelial cell. The cell may be a cell line. A suitable lung epithelial cell line is A594. Another suitable cell is the human embryonic kidney cell line 293T. In one embodiment of the present invention, the method of the present invention employs a cell as described herein.

The non-human organism employed in step (a) may be any organism capable of being infected with an influenza virus.

The influenza virus employed in the method of the present invention may be an influenza A virus. The influenza A virus may be selected from influenza A viruses isolated so far from avian and mammalian organisms. In particular, the influenza A virus may be selected from H1N1, H1N2, H1N3, H1N4, H1N5, H1N6, H1N7, H1N9, H2N1, H2N2, H2N3, H2N4, H2N5, H2N7, H2N8, H2N9, H3N1, H3N2, H3N3, H3N4, H3N5, H3N6, H3N8, H4N1, H4N2, H4N3, H4N4, H4N5, H4N6, H4N8, H4N9, H5N1, H5N2, H5N3, H5N6, H5N7, H5N8, H5N9, H6N1, H6N2, H6N3, H6N4, H6N5, H6N6, H6N7, H6N8, H6N9, H7N1, H7N2, H7N3, H7N4, H7N5, H7N7, H7N8, H7N9, H9N1, H9N2, H9N3, H9N5, H9N6, H9N7, H9N8, H10N1, H10N3, H10N4, H10N6, H10N7, H10N8, H10N9, H11N2, H11N3, H11N6, H11N9, H12N1, H12N4, H12N5, H12N9, H13N2, H13N6, H13N8, H13N9, H14N5, H15N2, H15N8, H15N9 and H16N3. More particularly, the influenza A virus is selected from H1N1, H3N2, H7N7, H5N1. Even more particularly, the influenza A virus is strain Puerto Rico/8/34, the avian influenza virus isolate H5N1, the avian influenza strain A/FPV/Bratislava/79 (H7N7), strain A/WSN/33 (H1N1), strain A/Panama/99 (H3N2), or a swine flu strain H1N1, such as A/HH/04/2009.

The influenza virus may be an influenza B virus. In particular, the influenza B virus may be selected from representatives of the Victoria line and representatives of the Yamagata line.

The at least modulator of influenza virus replication employed in the method of the present invention of the present invention may be selected from the group consisting of nucleic acids, nucleic acid analogues such as ribozymes, peptides, polypeptides, antibodies, aptamers, spiegelmers, small molecules and decoy nucleic acids.

The modulator of influenza virus replication may be a compound having a molecular weight smaller than 1000 Dalton or smaller than 500 Dalton. In the context of the present invention, “small molecule” refers to a compound having a molecular weight smaller than 1000 Dalton or smaller than 500 Dalton.

The nucleic acid employed in the present invention may be an antisense nucleic acid or a DNA encoding the antisense nucleic acid.

The nucleic acid or/and nucleic acid fragment employed in the present invention may have a length of at least 15, preferably at least 17, more preferably at least 19, most preferably at least 21 nucleotides. The nucleic acid or/and the nucleic acid fragment may have a length of at the maximum 29, preferably at the maximum 27, more preferably at the maximum 25, especially more preferably at the maximum 23, most preferably at the maximum 22 nucleotides.

The nucleic acid employed in the present invention may be a microRNA (miRNA), a precursor, a fragment, or a derivative thereof. The miRNA may have the length of the nucleic acid as described herein. The miRNA may in particular have a length of about 22 nucleotides, more preferably 22 nucleotides.

A further aspect of the present invention is a pharmaceutical composition comprising at least one inhibitor of influenza virus replication optionally together with a pharmaceutically acceptable carrier, adjuvant, diluent or/and additive, for the prevention, alleviation or/and treatment of an influenza virus infection.

In the pharmaceutical composition of the present invention, the at least one inhibitor may be selected from the group consisting of nucleic acids, nucleic acid analogues such as ribozymes, peptides, polypeptides, and antibodies, and compounds having a molecular weight below 1000 Dalton.

The influenza virus infection may be an influenza A virus infection or an influenza B virus infection, as described herein.

The at least one inhibitor in the pharmaceutical composition of the present invention may be capable of modulating gene expression or/and gene product activity. Modulation of the expression or/and gene product activity may be activation, as described herein. Modulation of the expression or/and gene product activity may be inhibition, as described herein.

The inhibitor may be a modulator as described herein.

The pharmaceutical composition may comprise a nucleic acid being RNA or DNA. Preferably, the nucleic acid in the pharmaceutical composition is selected from

-   -   (a) RNA, analogues and derivatives thereof,     -   (b) DNA, analogues and derivatives thereof, and     -   (c) combinations of (a) and (b).

In the pharmaceutical composition of the present invention, the at least one inhibitor may comprise

-   -   (a) a nucleic acid comprising a nucleotide sequence selected         from sequences of Table 1, Table 2, Table 3 and Table 4,     -   (b) a fragment of the sequence of (a) having a length of at         least 70%, at least 80%, at least 90%, at least 95%, at least         98%, or at least 99% of the sequence of (a),     -   (c) a nucleic acid comprising a sequence which is at least 70%,         at least 80%, at least 90%, at least 95%, at least 98%, or at         least 99% identical to the sequence of (a) or/and (b), or/and     -   (d) a sequence complementary to the sequence of (a), (b) or/and         (c).

In the pharmaceutical composition, the nucleic acid of (a) preferably comprises a nucleotide sequence selected from the sequences of Table 4 and fragments thereof.

Suitable inhibitors of influenza virus replication in the pharmaceutical composition of the present invention are RNA molecules capable of RNA interference. The nucleic acid in the pharmaceutical composition of the present invention may comprise

-   -   (i) an RNA molecule capable of RNA interference, such as siRNA         or/and shRNA,     -   (ii) a miRNA,     -   (iii) a precursor of the RNA molecule (i) or/and (ii),     -   (iv) a fragment of the RNA molecule (i), (ii) or/and (iii),     -   (v) a derivative of the RNA molecule of (i), (ii) (iii) or/and         (iv), or/and     -   (vi) a DNA molecule encoding the RNA molecule of (i), (ii) (iii)         or/and (iv).

A preferred nucleic acid is

-   -   (i) a miRNA,     -   (ii) a precursor of the RNA molecule (i), or/and     -   (iii) a DNA molecule encoding the RNA molecule (i) or/and the         precursor (ii).

Yet another preferred nucleic acid is

-   -   (i) an RNA molecule capable of RNA interference, such as siRNA         or/and shRNA,     -   (ii) a precursor of the RNA molecule (i), or/and     -   (iii) a DNA molecule encoding the RNA molecule (i) or/and the         precursor (ii).

RNA molecules capable of RNA interference are described in WO 02/44321 the disclosure of which is included herein by reference. MicroRNAs are described in Bartel D (Cell 136:215-233, 2009), the disclosure of which is included herein by reference.

The RNA molecule of the present invention may be a double-stranded RNA molecule, preferably a double-stranded siRNA molecule with or without a single-stranded overhang alone at one end or at both ends. The siRNA molecule may comprise at least one nucleotide analogue or/and deoxyribonucleotide.

The RNA molecule of the present invention may be an shRNA molecule. The shRNA molecule may comprise at least one nucleotide analogue or/and deoxyribonucleotide.

In the pharmaceutical composition of the present invention the nucleic acid may be an antisense nucleic acid or a DNA encoding the antisense nucleic acid.

In the pharmaceutical composition of the present invention, the nucleic acid may have a length of at least 15, preferably at least 17, more preferably at least 19, most preferably at least 21 nucleotides. In the pharmaceutical composition of the present invention the nucleic acid may have a length of at the maximum 29, preferably at the maximum 27, more preferably at the maximum 25, especially more preferably at the maximum 23, most preferably at the maximum 21 nucleotides.

The pharmaceutical composition of the present invention may comprise an antibody. Preferably the antibody is directed against a polypeptide comprising

-   -   (a) an amino acid sequence encoded by a nucleic acid or/and gene         selected from sequences of Table 1, Table 2, Table 3, and Table         4 and complementary sequences thereof,     -   (b) a fragment of the sequence of (a) having a length of at         least 70%, at least 80%, at least 90%, at least 95%, at least         98%, or at least 99% of the sequence of (a), or/and     -   (c) an amino acid sequence comprising a sequence which is at         least 70%, at least 80%, at least 90%, at least 95%, at least         98%, or at least 99% identical to the sequence of (a) or/and         (b).

Preferably, the pharmaceutical composition comprises a polypeptide of (a) comprising an amino acid sequence encoded by a nucleic acid or/and gene selected from Table 4.

The antibody of the present invention may be a monoclonal or polyclonal antibody, a chimeric antibody, a chimeric single chain antibody, a Fab fragment or a fragment produced by a Fab expression library.

Techniques of preparing antibodies of the present invention are known by a skilled person. Monoclonal antibodies may be prepared by the human B-cell hybridoma technique or by the EBV-hybridoma technique (Köhler et al., 1975, Nature 256:495-497, Kozbor et al., 1985, J. Immunol. Methods 81, 31-42, Cote et al., PNAS, 80:2026-2030, Cole et al., 1984, Mol. Cell. Biol. 62:109-120). Chimeric antibodies (mouse/human) may be prepared by carrying out the methods of Morrison et al. (1984, PNAS, 81:6851-6855), Neuberger et al. (1984, 312:604-608) and Takeda et al. (1985, Nature 314:452-454). Single chain antibodies may be prepared by techniques known by a person skilled in the art.

Recombinant immunoglobulin libraries (Orlandi et al, 1989, PNAS 86:3833-3837, Winter et al., 1991, Nature 349:293-299) may be screened to obtain an antibody of the present invention. A random combinatory immunoglobulin library (Burton, 1991, PNAS, 88:11120-11123) may be used to generate an antibody with a related specifity having a different idiotypic composition.

Another strategy for antibody production is the in vivo stimulation of the lymphocyte population.

Furthermore, antibody fragments (containing F(ab′)₂ fragments) of the present invention can be prepared by protease digestion of an antibody, e.g. by pepsin. Reducing the disulfide bonding of such F(ab′)₂ fragments results in the Fab fragments. In another approach, the Fab fragment may be directly obtained from an Fab expression library (Huse et al., 1989, Science 254:1275-1281).

Polyclonal antibodies of the present invention may be prepared employing an amino acid sequence encoded by a nucleic acid or/and gene selected from Table 1, Table 2, Table 3 and Table 4 or immunogenic fragments thereof as antigen by standard immunization protocols of a host, e.g. a horse, a goat, a rabbit, a human, etc., which standard immunization protocols are known by a person skilled in the art.

The antibody may be an antibody specific for a gene product of a target gene, in particular an antibody specific for a polypeptide or protein encoded by a target gene.

Aptamers and spiegelmers share binding properties with antibodies. Aptamers and spiegelmers are designed for specifically binding a target molecule.

The nucleic acid or the present invention may be selected from (a) aptamers, (b) DNA molecules encoding an aptamer, and (c) spiegelmers.

The skilled person knows aptamers. In the present invention, an “aptamer” may be a nucleic acid that can bind to a target molecule. Aptamers can be identified in combinational nucleic acid libraries (e.g. comprising >10¹⁵ different nucleic acid sequences) by binding to the immobilized target molecule and subsequent identification of the nucleic acid sequence. This selection procedure may be repeated one or more times in order to improve the specificity. The person skilled in the art knows suitable methods for producing an aptamer specifically binding a predetermined molecule. The aptamer may have a length of a nucleic acid as described herein. The aptamer may have a length of up to 300, up to 200, up to 100, or up to 50 nucleotides. The aptamer may have a length of at least 10, at least 15, or at least 20 nucleotides. The aptamer may be encoded by a DNA molecule. The aptamer may comprise at least one nucleotide analogue or/and at least one nucleotide derivatives, as described herein.

The skilled person knows spiegelmers. In the present invention, a “spiegelmer” may be a nucleic acid that can bind to a target molecule. The person skilled in the art knows suitable methods for production of a spiegelmer specifically binding a predetermined molecule. The spiegelmer comprises nucleotides capable of forming bindings which are nuclease resistant. Preferably the spiegelmer comprises L nucleotides. More preferably, the spiegelmer is an L-oligonucleotide. The spiegelmer may have a length of a nucleic acid as described herein. The spiegelmer may have a length of up to 300, up to 200, up to 100, or up to 50 nucleotides. The spiegelmer may have a length of at least 10, at least 15, or at least 20 nucleotides. The spiegelmer may comprise at least one nucleotide analogue or/and at least one nucleotide derivatives, as described herein.

The skilled person knows decoy nucleic acids. In the present invention, a “decoy” or “decoy nucleic acid” may be a nucleic acid capable of specifically binding a nucleic acid binding protein, such as a DNA binding protein. The decoy nucleic acid may be a DNA molecule, preferably a double stranded DNA molecule. The decoy nucleic acid comprises a sequence termed “recognition sequence” which can be recognized by a nucleic acid binding protein. The recognition sequence preferably has a length of at least 3, at least 5, or at least 10 nucleotides. The recognition sequence preferably has a length of up to 15, up to 20, or up to 25 nucleotides. Examples of nucleic acid binding proteins are transcription factors, which preferably bind double stranded DNA molecules. Transfection of a cell, an embryonated egg, or/and a non-human animal, as described herein, with a decoy nucleic acid may result in reduction of the activity of the nucleic acid binding protein to which the decoy nucleic acid binds. The decoy nucleic acid as described herein may have a length of nucleic acid molecules as described herein. The decoy nucleic acid molecule may have a length of up to 300, up to 200, up to 100, up to 50, up to 40, or up to 30 nucleotides. The decoy nucleic may have a length of at least 3, at least 5, at least 10, at least 15, or at least 20 nucleotides. The decoy nucleic acid may be encoded by a DNA molecule. The decoy nucleic acid may comprise at least one nucleotide analogue or/and at least one nucleotide derivatives, as described herein.

The pharmaceutical composition as described herein is preferably for use in human or veterinary medicine.

The pharmaceutical composition of any of the preceding claims further comprises an agent suitable of transportation of the at least inhibitor of influenza virus infection into a cell, in particular into a lung epithelial cell.

The carrier in the pharmaceutical composition may comprise a delivery system. The person skilled in the art knows delivery systems suitable for the pharmaceutical composition of the present invention. The pharmaceutical composition may be delivered in the form of a naked nucleic acid, in combination with viral vectors, non viral vectors including liposomes, nanoparticles or/and polymers. The pharmaceutical composition or/and the nucleic acid may be delivered by electroporation.

Naked nucleic acids include RNA, modified RNA, DNA, modified DNA, RNA-DNA-hybrids, aptamer fusions, plasmid DNA, minicircles, transposons.

Viral vectors include poxviruses, adenoviruses, adeno-associated viruses, vesicular stomatitis viruses, alphaviruses, measles viruses, polioviruses, hepatitis B viruses, retroviruses, and lentiviruses.

Liposomes include stable nucleic acid-lipid particles (SNALP), cationic liposomes, cationic cardiolipin analogue-based liposomes, neutral liposomes, liposome-polycation-DNA, cationic immunoliposomes, immunoliposomes, liposomes containing lipophilic derivatives of cholesterol, lauric acid and lithocholic acid. Examples of compounds suitable for liposome formation are 1,2-dilauroyl-sn-glycero-3-phosphoethanolamine (DLPE); 1,2-dioleoyl-sn-glycero-3-phospho-L-serine (DOPS); cholesterol (CHOL); 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC).

Nanoparticles include CaCO₃ nanoparticles, chitosan-coated nanoparticle, folated lipid nanoparticle, nanosized nucleic acid carriers.

Polymers include polyethylenimines (PEI), polyester amines (PEA), polyethyleneglycol(PEG)-oligoconjugates, PEG liposomes, polymeric nanospheres.

The pharmaceutical composition may be delivered in combination with atelocollagen, carbon nanotubes, cyclodextrin-containing polycations, fusion proteins (e.g. protamine-antibody conjugates).

An RNA or/and a DNA molecule as described herein may comprise at least one nucleotide analogue. As used herein, “nucleotide analogue” may refer to building blocks suitable for a modification in the backbone, at least one ribose, at least one base, the 3′ end or/and the 5′ end in the nucleic acid. Backbone modifications include phosphorothioate linkage (PTs); peptide nucleic acids (PNAs); morpholino nucleic acids; phosphoroamidate-linked DNAs (PAs), which contain backbone nitrogen. Ribose modifications include Locked nucleic acids (LNA) e.g. with methylene bridge joining the 2′ oxygen of ribose with the 4′ carbon; 2′-deoxy-2′-fluorouridine; 2′-fluoro(2′-F); 2′-O-alkyl-RNAs (2-O-RNAs), e.g. 2′-O-methyl (2′-O-Me), 2′-O-methoxyethyl (2′-O-MOE). A modified base may be 2′-fluoropyrimidine. 5′ modifications include 5′-TAMRA-hexyl linker, 5′-Phosphate, 5′-Amino, 5′-Amino-C6 linker, 5′-Biotin, 5′-Fluorescein, 5′-Tetrachloro-fluorescein, 5′-Pyrene, 5′-Thiol, 5′-Amino, (12 Carbon) linker, 5′-Dabcyl, 5′-Cholesterol, 5′-DY547 (Cy3™ alternate). 3′ end modifications include 3′-inverted deoxythymidine, 3′-puromycin, 3′-dideoxy-cytidine, 3′-cholesterol, 3′-amino modifier (6 atom), 3′-DY547 (Cy3™ alternate).

In particular, nucleotide analogues as described herein are suitable building blocks in siRNA, antisense RNA, and aptamers.

As used herein, “nucleic acid analogue” refers to nucleic acids comprising at least one nucleotide analogue as described herein. Further, a nucleic acid molecule as described herein may comprise at least one deoxyribonucleotide and at least one ribonucleotide.

An RNA molecule of the present invention may comprise at least one deoxyribonucleotide or/and at least one nucleotide analogue. A DNA molecule of the present invention may comprise at least one ribonucleotide or/and at least one nucleotide analogue.

Derivatives as described herein refers to chemically modified compounds. Derivatives of nucleic acid molecules as described herein refers to nucleic acid molecules which are chemically modified. A modification may be introduced into the nucleic acid molecule, or/and into at least one nucleic acid building block employed in the production of the nucleic acid.

In the present invention the term “fragment” refers to fragments of nucleic acids, polypeptides and proteins. “Fragment” also refers to partial sequences of nucleic acids, polypeptides and proteins.

Fragments of polypeptides or/and peptides as employed in the present invention, in particular fragments of an amino acid sequence encoded by a nucleic acid or/and gene selected from Table 1, Table 2, Table 3 and Table 4 may have a length of at least 5 amino acid residues, at least 10, or at least 20 amino acid residues. The length of said fragments may be 200 amino acid residues at the maximum, 100 amino acid residues at the maximum, 60 amino acid residues at the maximum, or 40 amino acid residues at the maximum.

A fragment of an amino acid sequence as described herein may have a length of at least 70%, at least 80%, at least 90%, at least 95%, at least 98%, at least 99% of the sequence.

A fragment of a nucleotide sequence as described herein may have a length of at least 70%, at least 80%, at least 90%, at least 95%, at least 98%, at least 99% of the sequence.

A fragment of a nucleic acid molecule given in Tables 1, 2, 3, and 4 may have a length of up to 1000, up to 2000, or up to 3000 nucleotides. A nucleic acid fragment may have a length of an siRNA molecule, an miRNA molecule, an aptamer, a spiegelmer, or/and a decoy as described herein. A nucleic acid fragment may also have a length of up to 300, up to 200, up to 100, or up to 50 nucleotides. A nucleic acid fragment may also have a length of at least 3, at least 5, at least 10, at least 15, or at least 20 nucleotides.

In the present invention, specific embodiments refer to any individual gene, nucleic acid sequence or/and gene product described in the present application. In a specific embodiment, an individual gene is selected from the genes described in Table 1, Table 2, Table 3, and Table 4. In another specific embodiment, an individual gene product is selected from the gene products produced by the genes described in Table 1, Table 2, Table 3, and Table 4. In yet another specific embodiment, an individual nucleic acid sequence is selected from the nucleic acid molecules described in Table 1, 2, 3 and 4. Further specific embodiment refer to any combination of genes, gene products and nucleic acid molecules described in the Tables 1, 2, 3, and 4.

In the present invention, a reference to Table 4 is a reference to a target, gene or/and nucleotide sequence selected from ACTN1, ATP6AP2, ATP6V1B2, BNIP3L, BRUNOL6, CUEDC2, CYC1, FNTB, GCLC, GNRH2, GRIN2C, GRP, HARBI1, HSPD1, ICAM2, KCNJ12, KPNB1, LAMC2, LOC440733, MKL1, MRPS12, MYEF2, NDUFV3, NECAP2, ODZ4, PIK3R6, PPARA, RAB4A, SCAF1, SCARB1, SERPINA6, SERPINB2, SERPINE2, SEZ6L2, TBL3, TRERF1, TRIM60, and TUBB4.

In the present invention, a reference to Table 4 may also be a reference to a target gene or/and nucleotide sequence selected from ACTN1, BNIP3L, BRUNOL6, CUEDC2, CYC1, GCLC, GNRH2, GRIN2C, GRP, HARBI1, HSPD1, ICAM2, KCNJ12, LAMC2, LOC440733, MKL1, MRPS12, MYEF2, NDUFV3, NECAP2, ODZ4, PIK3R6, PPARA, RAB4A, SCAF1, SCARB1, SERPINA6, SERPINB2, SERPINE2, SEZ6L2, TBL3, TRERF1, TRIM60, and TUBB4.

Yet another aspect of the present invention is the use of an inhibitor of influenza virus replication capable of inhibiting or activating the expression of a gene selected from Table 1, Table 2, Table 3 and Table 4, or/and of inhibiting or activating a gene product thereof, for the manufacture of a medicament or/and vaccine for the prevention, alleviation or/and treatment of an influenza virus infection. Preferably, the gene is selected from Table 4. Preferably, those genes which upon inhibition by e.g. siRNA, as disclosed herein, result in decrease of virus production are activated, wherein those genes which upon inhibition by e.g. siRNA, as disclosed herein, result in increase of virus production are inhibited.

In the context of the present invention, “manufacture of a medicament or/and vaccine” includes the production of influenza virus, wherein the amount of influenza virus is increased by activating or inhibiting a gene selected from Tables 1, 2, 3 and 4, preferably Table 4. Preferably, those genes which upon inhibition by e.g. siRNA, as disclosed herein, result in decrease of virus production are activated, wherein those genes which upon inhibition by e.g. siRNA, as disclosed herein, result in increase of virus production are inhibited in the production of the medicament or/and vaccine.

Yet another aspect of the present invention is method for production of an influenza virus, wherein the amount of influenza virus is increased by activating or inhibiting a gene selected from Tables 1, 2, 3 and 4, preferably Table 4. Preferably, those genes which upon inhibition by e.g. siRNA, as disclosed herein, result in decrease of virus production are activated, wherein those genes which upon inhibition by e.g. siRNA, as disclosed herein, result in increase of virus production are inhibited in the production of the influenza virus. In the method for production of an influenza virus, at least one gene selected from Tables 1, 2, 3 and 4, preferably Table 4, may be overexpressed if activation leads to an increased virus production.

Suitable methods for the production of influenza viruses, for instance in embryonated eggs or/and cell culture, are known in the state of the art.

Yet another aspect of the present invention is a method of prevention, alleviation or/and treatment of an influenza virus infection, comprising administering to a subject in need thereof a therapeutically effective amount of an inhibitor of influenza virus replication, as described herein. In the method of prevention, alleviation or/and treatment of an influenza virus infection, delivery systems and delivery methods as described herein may be used.

Yet another aspect of the present invention is the use of a nucleic acid comprising a gene sequence or/and a nucleotide sequence selected from Table 1, Table 2, Table 3, and Table 4 and fragments thereof in a method for screening for compounds or/and targets suitable for the prevention, alleviation or/and treatment of an influenza virus infection. Preferably a combination of at least two nucleic acids is used. It is also preferred that the nucleic acid or the combination is selected from Table 4. The combination may inhibit expression or/and activity of a gene, preferably selected from Tables 1, 2, 3 and 4, more preferably selected from Table 4.

The invention is further illustrated by the following figures, tables and examples.

FIGURE AND TABLE LEGENDS

FIGS. 1A-C|Genome-wide RNAi screen reveals host factors required for the influenza infectious cycle. FIG. 1A, Outline of the screening procedures. FIG. 1B, Negative Log(p-values) of enriched terms according to the GO of the cellular compartments. Numbers of identified factors per ontology, numbers of genes associated with the GO term, and the enrichment factors are indicated. FIG. 1C, Interaction amongst hits associated with RNA splicing, as assessed using the STRING interaction database. Green circles, primary hit; white circle, non-hit. Members of ribosomal and spliceosomal multi-protein complexes are enclosed in larger circles. Thick grey border indicates hits identified in Reactome analysis (see FIG. 10A-C).

FIGS. 2A-C|Host cell factors affect replication of a broad range of influenza virus variants. FIG. 2A, Four siRNAs per gene were individually transfected in A549 cells followed by infection with influenza A/WSN/33 or A/Hamburg/04/2009 viruses (both at MOI 0.001) in four independent experiments. Infectious viral particles (IVP) were quantified at 48 h p.i. using the replication assay and analysed by calculating the normalised percent of inhibition. FIG. 2B, Venn diagram of hits validated in FIG. 2A. FIG. 2C, FsiRNAs (as indicated) were transfected in A549 cells and then infected (48 h later) with the avian H5N1 strain (A/Vietnam/1203/2004, MOI 0.1). Plaque forming units (PFU) were quantified at 20 h p.i. using the replication assay. Data show mean+standard error of the mean (S.E.M) of duplicate samples.

FIGS. 3 A-C|Dissection of infection processes affected by host cell factors. FIG. 3A, Transfected A549 cells were infected with influenza A/WSN/33 virus (MOI 5) for 3 h (upper panel) and 5 h (lower panel). Samples were stained for nuclei (blue) and NP (green). FIG. 3B, At 48 h p.t., A549 cells were infected with influenza A/WSN/33 virus (MOI 1). At 2 h p.i., vRNA and viral mRNA were quantified by qRT-PCR. RNA levels were normalized to the non-targeting (Allstars) siRNA control. FIG. 3C, Transfected A549 cells were infected with influenza A/WSN/33 virus (MOI 10) for 45 min. Samples were stained for influenza virus (green) and CD63 (red). Images are representative of three independent experiments in FIG. 3A and FIG. 3C.

FIGS. 4A-E|In-depth analysis of the impact of p27 and CLK1 on influenza A virus infection. FIG. 4A, Quantification of virus replication in primary NHBE cells after siRNA-mediated target knockdown using the replication assay. Cells were infected with influenza A/WSN/33 virus (MOI 0.1) 48 h p.t. FIG. 4B, A549 cells were pretreated with TG003 (50 μM) or DMSO for 24 h and subsequently infected with influenza A/WSN/33 virus (MOI 0.01). IVPs were quantified at 40 h p.i. FIG. 4C, FIG. 4D, Ratio of spliced M2 to unspliced M1 after inhibition of CLK1 by TG003 at the RNA (c) or protein level (d). A549 cells were pretreated for 2 h or 24 h with TG003 (50 μM) or DMSO, then infected with influenza A/WSN/33 virus (MOI 4) for 5 h. FIG. E, C57BL/6 wild-type or homozygous p27^(−/−) mice (n=4) were intranasally infected with influenza A/Puerto Rico/8/34 virus (10×LD50) and at 48 h p.i. IVPs within the lungs were quantified. Student's t-test was used to determine p value, *p=0.041. Data in FIGS. 4A,4B are mean+standard deviation (SD) of three independent experiments. Blots in FIGS. 4C, 4D are representative of three independent experiments.

FIGS. 5A-B|FIG. 5A Screening Controls. Depicted are representative images of the non-targeting (Allstars) and inhibitory (siNP) control samples, stained with an anti-NP antibody and analysed by automatic microscopy. FIG. B, Graph depicts light units exerted by the corresponding supernatants transferred onto 293T reporter cells.

FIG. 6|Relative frequency distribution of screening data. Shown are data gained from the luciferase reporter assay (left panel), percentage of infected cells (middle panel), and the number of infected cells (right panel) across all screening samples and controls. All data are normalised to the plate median.

FIG. 7|Histogram of Pearson's correlation coefficients calculated for all siRNA screening plates. Distribution of pairwise correlations for the normalised values of number of infected cells derived from all siRNA screening plates. Blue lines indicates all plates, red line indicates sets of replicates. Only values originating from sample wells were used for calculating the correlation coefficients. Control well values were excluded from this analysis.

FIG. 8|Workflow of RNAi screen data analysis. Data analysis procedures (left panel) and associated applied thresholds (right panel) are shown. Raw screening data from all three read-out parameters was subjected to an analysis pipeline incorporating statistical thresholds at each stage. The data analysis workflow was done separately for all three read-outs and the final hit lists of each one were combined to provide a definitive primary hit list of 287 factors.

FIG. 9|Gene enrichment analysis. Negative Log 10(p-values) of enriched terms according to the gene ontology of the molecular function, biological process, and cellular compartments. Values at bars indicate the number of identified factors per ontology, the number of genes associated with the term and the enrichment factor.

FIGS. 10A-C|Reactome analysis. The 287 ‘high-confidence’ hits identified in the primary screen, were analyzed using the online web-resource Reactome (reactome.org), a database of biological pathways in human cells. Each pathway is referred to as an event. The hits were uploaded as gene-identifiers using the ‘sky-painter’ tool, calculating a one-tailed Fisher's exact test for the probability of observing at least N genes from an event. 104 identifiers could be matched to 399 out of 4374 events. Several categories showed a significant overrepresentation such as Gene Expression (p=3.4e-07, 29/384), Transcription (p=1.1e-03, 14/198), Membrane Trafficking (2.5e-03, 6/50) or Influenza-(1.9e-04, 15/187) and HIV-infection (2.5e-01, 14/406). Single events are coloured according to the number of matching identifiers from blue (1 matching identifier) to red (12 matching identifiers). Prominent categories showing overrepresentation of hits were coloured and important events were marked using an arrow. Several events were further analysed using the STRING database. (FIG. 11).

FIG. 11|Interaction networks of the identified hits. Interactions amongst hits associated with vacuolar ATPases, nuclear transport, coat complex formation and translation, as assessed using the STRING interaction database (http://string.embl.de). Green circles, primary hit; dark green circles, primary hit also identified by a Drosophila-based influenza screen (13). All hits included in one large circle: members of one multi-protein complex, e.g. 40S ribosomal subunit. Hits with a thick grey border are also included in the Reactome pathway analysis (FIG. 10).

FIG. 12|Host cell viability determination by WST-1 assay. A549 cells were transfected with indicated siRNAs followed by adding the WST-1 reagent 48 h later to analyse eventually toxic effects due to siRNA transfections. Background subtracted mean values from two replicates are illustrated as a heat map. An siRNA targeting PLK1 was used as positive control. Missing siRNAs (less than four per gene) are indicated by grey boxes.

FIGS. 13A-B|Host cell factors affect replication of a H1N1 influenza virus variants. A subset of siRNAs was again transfected in A549 cells that were infected (48 h later) with the A/WSN/33 (FIG. 13A) or A/Hamburg/04/2009 (FIG. 13B) virus strains. IVPs in the virus containing supernatants were determined using the replication assay. Infection rate is expressed as a percentage of the non-targeting (Allstars) transfected control. Data show mean+S.E.M of duplicate samples. Cells transfected with the non-targeting control (Allstars) exhibited ca. 1.8×10⁶ IVP/ml in the supernatant of A/WSN/33 infected and 6.6×10³ IVP/ml upon A/Hamburg/04/2009 (A/H/04/09) virus infection. The inhibitory NP siRNA reduced the amount of infectious particles to 2.6×10⁴ IVP/ml (A/WSN/33) and 4.5×10² IVP/ml (A/Hamburg/04/2009), respectively.

FIGS. 14A-D|Relative frequency distributions of NP expression. Relative frequency distributions of mean values of nuclear NP 3 h p.i. Shown are values gained from two separate wells of the Allstars (Allstars W1 and W2) and NP (siNP W1 and W2) control as well as two independent siRNAs for the indicated target genes. Results are representative profiles of three independent experiments.

FIGS. 15A-C|Relative frequency distributions of nuclear export of NP. Relative frequency distributions of the ratios of cytosolic to nuclear NP 5 h p.i. Shown are values gained from two separate wells of the Allstars (Allstars W1 and W2) and NP (siNP W1 and W2) control as well as two independent siRNAs for the indicated target genes. Results are representative profiles of three independent experiments.

FIGS. 16A-B|P-values of differences between relative frequency distributions. Negative Log 10(p-values) of the samples shown in FIGS. 14A-D and 15A-C as assessed by the one-sided Kolmogorov-Smirnov test.

FIG. 17|Quantification of co-localised virus particles. SON knockdown and control cells were infected with influenza A virus (A/WSN/33) for 45 min at 37° C. after incubation on ice. Cells were fixed and stained for influenza A virus and CD63 as described. Confocal pictures were taken and co-localisation was determined as described in Methods. Total numbers of viral particles and co-localised particles were quantified using ImageJ “Analyse particle” function. In total 34 cells were quantified for each condition. Diagram shows mean numbers of particles for two independent experiments. Control, black bars; Son knockdown, hatched bars; **<0.005; standard error of the mean (S.E.) is depicted.

FIG. 18|Influence of the chemical CLK1 inhibitor TG003 on cell viability. A549 cells were incubated with TG003 (50 μM, dissolved in DMSO), with DMSO or left untreated. Cell viability was evaluated at the indicated time points using the WST-1 assay, according to the manufacturer's instructions. Shown are the mean values from three replicates. Error bars indicate the standard deviation.

FIG. 19|Influence of the chemical CLK1 inhibitor TG003 on VSV replication. A549 cells were pretreated with TG003 (50 μM, dissolved in DMSO) or DMSO (as a control), for 24 h and subsequently infected with VSV (MOI 0.01). After infection, the inhibitor or DMSO was added again at identical concentrations. The supernatants of treated or untreated cells were harvested at 24 h p.i. and infectious virus particles quantified by detecting plaques on MDCK cells.

Table 1|Primary screening data and hit. Primary hit list and screening data. Shown are the Z-scores obtained from the CellHTS and the Genedata Screener® software analysis, and the RSA analysis for the classification of a particular siRNA as a hit. The mean cell number as an indicator for cell viability is shown. siRNAs leading to a mean cell number below 750 were defined as toxic. Gene expression fold changes upon infection, plus corresponding p-values and expression intensities as assessed by microarray analysis are also given.

Table 2|Hit validation data. Shown are the siRNA IDs as provided by the supplier, the WST assay data, and the normalised percent inhibition data together with the number of validated siRNAs per gene for both tested viruses.

Tables 3 and 4|Targets identified in the siRNA screen of the Example. Disclosed are oligonucleotide sequences (SEQ ID NO: 25-1173) employed in the siRNA screen of example 1. Up to four oligonucleotide sequences (“siRNAI Target”, “siRNA2 Target”, “siRNA3 Target”, “siRNA4 Target”,) specific for a target gene were employed.

EXAMPLE Human Host Cell Factors Crucial for Influenza Virus Replication Identified by Genome-Wide RNAi Screen

Summary

Influenza A virus, being responsible for seasonal epidemics and reoccurring pandemics, represents a global threat to public health (1). High mutation rates facilitate the generation of viral escape mutants rendering vaccines and drugs directed against virus-encoded targets potentially ineffective (2). In contrast, targeting host cell determinants temporarily dispensable for the host but crucial for virus replication could prevent viral escape.

In this example, the discovery of 287 human host cell genes influencing influenza A virus replication in a genome-wide RNAi screen is described. Using an independent assay we confirmed 168 hits (59%) inhibiting either the endemic H1N1 (119 hits) or the current pandemic swine-origin (121 hits) influenza A virus strains, with an overlap of 60%. Importantly, a subset of these common hits was also essential for replication of a highly pathogenic avian H5N1 strain. In-depth analyses of several factors provided insights into their infection stage relevance. Notably, SON DNA binding protein (SON) (3) was found to be important for normal trafficking of influenza virions to late endosomes early in infection. We also show that a small molecule inhibitor of CDC-like kinase 1 (CLK1) (4) reduces influenza virus replication by more than two orders of magnitude, an effect connected with impaired splicing of the viral M2 mRNA. Furthermore, influenza virus-infected p27^(−/−) (cyclin-dependent kinase inhibitor 1B; Cdkn1b) mice accumulated significantly lower viral titers in the lung providing in vivo evidence for the importance of this gene. Thus, our results highlight the potency of genome-wide RNAi screening for the dissection of virus-host interactions and the identification of drug targets for a broad range of influenza viruses.

Introduction

During the course of infection, the influenza virus encounters numerous bottle necks, constituted by host cell functions essential or inhibitory for viral propagation (5). Comprehensive knowledge of such critical host cell determinants could provide valuable insight into the molecular mechanisms of viral replication and facilitate the development of a novel generation of drugs that target host cell factors and are thus less prone to select for resistant viral mutants. To identify host cell factors involved in the viral infection cycle in human cells, we conducted a genome-wide RNAi screen using a two-step approach (FIG. 1 a): First, A549 human lung epithelial cells, transfected with siRNAs 48 h prior to infection with influenza A H1N1 virus (A/WSN/33), were stained with a virus-specific antibody at 24 h post infection (p.i.) to monitor cell infection rates. Second, virus supernatants from these transfected A549 cells were transferred onto 293T human embryonic kidney reporter cells, containing an inducible influenza virus-specific luciferase construct (FIaA) (6). Assay reliability was confirmed with an siRNA directed against influenza virus nucleoprotein (NP) mRNA (7). Knockdown of NP effectively blocked viral replication, as assessed by immunofluorescence staining and the luciferase reporter assay (FIG. 5). Statistical analyses further confirmed the robustness of our assay controls (NP and the non-targeting Allstars siRNA) and reproducibility of results (FIGS. 6 and 7). Using this bipartite assay, we screened a genome-wide siRNA library consisting of ca. 62,000 siRNAs targeting ca. 17,000 annotated genes and ca. 6,000 predicted genes.

For identification of primary hits, three parameters were included: luciferase expression, the percentage of infected cells, as determined by immunofluorescence microscopy, and the total number of infected cells. After excluding non-expressed genes and toxic siRNAs, primary screening data from all three parameters were separately subjected to an analyses pipeline with statistical checkpoints at each step, finally leading to hit selection based on Z-scores below −2 (FIG. 8 and Methods). Results from each of the three parameters were combined, and from a total of 22,843 human genes (annotated and predicted) 287 were designated primary hits (Table 1).

Among these high-confidence candidates we found several genes known to play a pivotal role in influenza virus replication, e.g. the nuclear export factors NXF1 (8) and XPO1 (9), as well as the vacuolar ATPase ATP6V0D1 (10,11). Gene ontology (GO) term enrichment analysis revealed our dataset was markedly enriched in gene categories associated with the proton-transporting two-sector ATPase complex, the spliceosome, the small ribosomal subunit, the eukaryotic translation initiation factor 3 (EIF3), the COPI coated vesicle transport and the nuclear pore complex (FIG. 1 b and FIG. 9), which comprise functional categories already associated with viral replication. Further bioinformatic analysis using Reactome (12) corroborated the GO results (FIG. 10). In-depth analysis of selected enriched functional categories using the STRING database revealed numerous interactions between factors associated with the same GO term (FIG. 11). Interestingly, we found multiple factors connected with pre-mRNA splicing (FIG. 1 c), which escaped detection in a previous RNAi screen using Drosophila cells (13). However, the small ribosomal subunit and EIF3 were enriched in the Drosophila-based influenza screen (13) but not in other viral RNAi screens (14, 15, 16, 17), indicating these factors could be influenza-specific (18).

Next, we independently ascertained the significance of all 287 primary hits for replication of the influenza A/WSN/33 (H1N1) and the current pandemic swine-origin influenza A/Hamburg/04/2009 (H1N1) viruses. The number of viruses released from siRNA transfected A549 cells was determined by titrating supernatants on Madin-Darby canine kidney (MDCK) cells. For each primary hit four different siRNAs were used individually to knockdown gene function. We found that 119 (A/WSN/33) and 121 (A/Hamburg/04/2009) of the 287 primary hits decreased virus number by more than fivefold in comparison to control samples, with a least two siRNAs (FIG. 2 a), without impairing cell viability (FIG. 12). In total, 168 primary hits were validated, comprising an overall validation rate of −59%. Remarkably, of the factors inhibiting viral replication, 72 were common to both influenza virus strains, indicative of their broad inhibitory potential (FIG. 2 b and Table 2).

Validation was extended to the highly pathogenic avian-origin influenza A virus of the H5N1 subtype (A/Vietnam/1203/2004) using a subset of the common siRNAs. The knockdown efficiencies shown in the following Table (percentages of knockdown±standard deviation as obtained in three independent experiments):

siRNA Knockdown [%] SD [%] ATP6V0D1_1 95% 2% ATP6V0D1_2 98% 1% COPG_1 89% 8% COPG_2 63% 25% EIF4A3_1 96% 2% EIF4A3_2 95% 3% NUP205_1 85% 12% NUP205_2 83% 7% NUP98_1 86% 10% NUP98_2 83% 6% NXF1_1 53% 39% NXF1_2 79% 17% SON_1 77% 19% SON_2 81% 16%

Strikingly, H5N1 virus replication decreased by more than two orders of magnitude using these siRNAs (FIG. 2 c). Likewise, knockdown of identical targets inhibited replication of influenza A/WSN/33 (H1N1) virus and the pandemic A/Hamburg/04/2009 (H1N1) strain (FIG. 13). The observation that a subset of common factors blocked replication of both swine and avian-origin virus variants corroborates that these proteins constitute crucial sub-type independent host-cell checkpoints.

The life-stage relevance of 18 targets, representing a variety of functional categories and affecting both H1N1 influenza viruses, was assessed by immunofluorescence staining for NP as a marker of viral ribonucleoprotein (vRNP) localisation (19). Typically, vRNP is confined to the nucleus early in infection, but enters the cytoplasm for packaging into progeny virions late in infection (19). Here, upon knockdown of all targets, NP gave a mainly nuclear signal at 3 h p.i. (FIG. 3 a, upper panel), shifting towards cytoplasmic staining 2 h later (FIG. 3 a, lower panel). In addition to the expected blockage of NP synthesis upon inhibition of NXF1 (8,20), knockdown of several identified hits such as COPG, SON, and ATP6V0C appeared to reduce NP expression levels (FIG. 3 a, upper panel) and to delay export of NP from the nucleus (FIG. 3 a, lower panel). Relative frequency distribution analysis of NP expression and cytosolic to nuclear NP ratios within single cells corroborated our microscopic observations (FIGS. 14-16). In total, knock down of 11 genes significantly reduced NP expression and interfered with nuclear export of NP.

To analyse the impact of targets, shown to affect NP synthesis and localisation, on the synthesis of viral RNA, we infected siRNA-transfected cells with influenza virus and determined the levels of viral genomic RNA (vRNA) and viral mRNA at 2 h p.i. by qRT-PCR (7). Most of the analysed targets had no effect on virus cell entry, as indicated by robust vRNA detection (FIG. 3 b). However, for many targets, including identified ATPases and SON, a protein known to repress Hepatitis B virion production (3), plus several factors involved in RNA biogenesis, e.g. NXF1, viral mRNA, synthesis was substantially reduced (FIG. 3 b). This demonstrates virus propagation is affected at a stage between virus entry and mRNA synthesis. Knockdown of SON also reduced vRNA levels (FIG. 3 b), indicating it functions in an infection step preceding viral mRNA synthesis. Accordingly, considerably less virus particles co-localised with CD63-labelled late endosomes upon SON knockdown (FIG. 3 c; FIG. 17), suggesting this factor is important for trafficking of influenza virions early in the infection cycle. Intriguingly, knockdown of the nucleoporin 98 kDa (NUP98) increased vRNA level (FIG. 3 b), most likely due to accelerated de novo vRNA synthesis, but at the same time dramatically decreased viral progeny (FIG. 2 a; FIG. 13). Consistent with its reported antiviral (8) and proviral functions (13), these seemingly contradictory results suggest NUP98 exerts an inhibitory effect early in the life cycle but is mandatory for completion of viral replication. Taken together, these data reveal that the 11 targets (identified as reducing NP expression levels) interfere with early events in virus replication. In contrast, knockdown of the remaining 7 factors analysed in this set of experiments, such as CLK1 or p27 (CDKN1B), probably exert their function during later infection stages.

To more closely mimic in vivo conditions, we tested the effect of target knockdown on influenza virus replication in primary normal human bronchial epithelial cells (NHBE). Most notably, knockdown of CLK1 and ATP6V0D1 strongly reduced viral growth in these cells (FIG. 4 a). We independently assessed the function of CLK1 by treating A549 cells with TG003, a chemical inhibitor of CLK1 (4). Influenza virus propagation was inhibited by more than 93% (FIG. 4 b) without exerting detectable toxic effects (FIG. 18). CLK1 regulates alternative splicing in mammalian cells by phosphorylating the splicing factor SF2/ASF (21, 22), therefore we hypothesized that inhibition of CLK1 would affect splicing of viral RNAs. In accordance, TG003 reduced levels of spliced M2 viral RNA, whereas unspliced M1 and NS1/NS2 were unaffected (FIG. 4 c, data not shown). Immunoblot analysis corroborated our qRT-PCR results, revealing drastically reduced M2 protein levels following treatment with TG003, whereas M1 protein levels remained relatively constant (FIG. 4 d). Since the SF2/ASF complex is important for splicing and the shuttling of spliced viral mRNAs to the cytoplasm (23), it is conceivable that reduction of M2 protein expression was at least partially caused by nuclear retention of its mRNA transcript. Our finding that CLK1 is involved in processing viral M2 mRNA is consistent with the essential role of the SF2/ASF splicing factor in viral M2 ion channel protein production (24). Interestingly, replication of vesicular stomatitis virus (VSV), which, unlike influenza, does not depend on splicing of its own viral RNA, was only slightly reduced in the presence of TG003 (FIG. 19).

During the primary screen and the hit validation, knockdown of the cell cycle regulator p27 led to a strong inhibition of influenza virus replication. To confirm the impact of p27 on viral replication under in vivo conditions, p27^(−/−) mice were intranasally infected with influenza A/Puerto Rico/8/34 (H1N1) virus. At 2 d p.i., virus load within the lungs of p27^(−/−) mice was significantly reduced (FIG. 4 e). The observation that a lack of p27 reduces influenza virus replication in vivo but does not affect mouse viability, indicates certain cellular proteins involved in influenza virus replication are dispensable for the host organism.

Thus, this first genome-wide RNAi screen in human cells for factors affecting influenza virus replication has provided new and comprehensive information on host cell determinants of replication, and uncovered potential targets for novel antiviral strategies. We provide in vitro and in vivo evidence for the role of CLK1 and the tumor suppressor p27, using a small molecule inhibitor and a homozygous knockout model, respectively. The majority of the hits analysed in-depth appear to function during early infection processes such as viral protein synthesis and nuclear export of viral RNA. Importantly, most of the validated hits are essential for a broad spectrum of influenza viruses, including the pandemic swine-origin H1N1 influenza virus and even a highly pathogenic avian H5N1 strain. This holds promise for the therapeutic potential of these targets against novel emerging influenza viruses with minimised likelihood of developing drug resistant variants. In conclusion, transient interference with distinct host cell functions during infection is likely to extend our current armament, consisting of vaccines and virus-targeted drugs, in the battle against the recurring threat of seasonal and pandemic influenza virus infections.

In the present screen, a range of cellular functions were identified which were associated with influenza virus propagation. Amongst the significantly enriched functional categories are the small ribosomal subunit and the translation initiation factor EIF3, splicing associated genes, vesicular (coat complex formation) and nuclear transport, as well as vacuolar ATPases. In contrast, in other viral RNAi-based screens, including an influenza virus screen in Drosophila cells, mostly single metabolic functions were enriched in the hit lists (13, 14, 15, 17). This general observation strengthens the impact of performing RNAi screens in homologous host cell models.

The small ribosomal subunits and the translation initiation factor EIF3 components comprised a major cellular function enriched in a recent Drosophila-based influenza virus screen (13) but not in other viral RNAi screens (14-17). Yet, only single components of the large ribosomal subunit were included in either the previous or our current influenza screens. Toxicity, as determined by our WST assay (c.f. FIG. 11) and viable cell counts (c.f. Table 1), did not have a major impact on the knockdown cells. Kittler et al. found knockdown of many of these genes impacted the cell cycle (arrest) and division, but toxicity was a confounding factor in a minimal number of cases. A Drosophila C virus screen identified small as well as large ribosomal subunit genes as enriched and this finding was linked to IRES-mediated translation initiation (18). Translation of influenza mRNAs is initiated in a Cap-dependent and 5′-UTR-mediated manner (Garfinkel et al., Kash et al.) and the initiation factor EIF4E within the EIF4F complex is substituted by the viral polymerase (Burgui et al.). On the other hand, EIF4GI, another member of the EIF4F complex, is targeted by NS1, enhancing preferential translation of late viral mRNAs in particular (Aragon et al.). The eukaryotic 5′-UTR targeting factor GRSF-1, which also enhances translation of influenza mRNAs, was not identified as a hit in our screen (Kash et al.). Besides these known factors, other host cell proteins may play an important role in initiating translation of viral mRNAs (Burgui et al.). The identification of defined translation machinery components in two influenza virus RNAi screens but not other viral screens, suggests these factors could be influenza virus A specific. We speculate that the small ribosomal subunit as well as EIF3 complete the pre-initiation complex that initiates virus-specific, selective translation and probably contribute to the inhibition of host cell gene translation.

Since pre-mRNA splicing is a major cellular function known to be important for gene expression in a variety of viral systems (reviewed by e.g. Engelhardt et al.), we expected this function to be identified in our screen. Yet, the Drosophila influenza virus screen does not show the same enrichment of splicing factors. This could be due to the experimental limitations of the Drosophila host cell system for influenza A virus infection and replication, therefore other processes might be important in this experimental system. This might also apply to other cellular processes we identified. König et al. (17) found many splicing factors in their HIV early stage replication screen. HIV mRNA splicing is a very complex and highly regulated process that ensures co-ordinated expression of the different viral proteins as well as production of unspliced genomic RNA (reviewed by e.g. Stoltzfus et al). Brass et al. (16) detected several splicing associated factors amongst the HIV-dependency factors (HDFs) included in their screen. Because the individual flavivirus proteins are derived by co- and post-translational cleavage from a polyprotein translated from an unspliced RNA (e.g. Beasley et al), splicing factors are virtually missing in the Dengue and West Nile virus hit lists (14, 15). Furthermore, vacuolar ATPases are enriched in our screen as well as the West Nile virus screen (14). Both viruses rely upon acidification of the phagosome to enter the cytoplasm (reviewed by e.g. Bouvier et al.). Single vacuolar ATPase subunits were also included in the Drosophila-based influenza virus screen (13).

The nuclear transport factors are required for export of the viral RNA into the cytoplasm to be translated and incorporated into new virus particles. The cyclin-dependent kinase inhibitor 1B (p27, also CDKN1B) involved in cell cycle regulation and other cellular processes (Borriello et al.), is associated with this network. Phosphorylation at certain amino acid residues regulates cellular localisation and thereby function and stability (Ishida et al., Connor et al.). p27 is exported into the cytoplasm by XPO1/RanGTP. p27 is a tumour suppressor in the nucleus, whereas is acts as an oncogene with pro-metastatic capability in the cytoplasm. This functional versatility (reviewed by e.g. Borriello et al.) makes is difficult to trace the step involved in influenza virus replication. To connect it to the cell-cycle arrest associated with knockdown of many ribosomal subunits (see above) is one promising route for future investigation.

Two different COP vesicles operate in the early secretory pathway (reviewed by Lee et al.). COPII vesicles mediate exit from the endoplasmatic reticulum (ER) and transport to the ER-Golgi-intermediate compartment (ERGIC), whereas COPI vesicles are involved in retrograde transport from the Golgi apparatus to the ER or between different Golgi cisternae and in anterograde transport. The influenza glycoproteins HA and NA are synthesised at the ER, transported to the Golgi apparatus and then trafficked to the plasma membrane (Bouvier et al.). Therefore, factors involved in early secretory pathway of the host cell are likely candidates affecting influenza propagation. In the present work, we have shown that knockdown of COPA, COPB1, COPB2, COPD, COPE or COPG reduced number of infectious viruses, demonstrating that these factors are important for the production of infectious influenza A viruses. Specifically, knockdown of COPG dramatically reduced levels of NP at 3 h p.i. (FIG. 3 a and FIGS. 14-16), hinting at a role in early infection processes. These observations are in agreement with a previous RNAi screen that identified COPG as essential for influenza A virus replication in insect cells (13). The underlying mechanism of COPI function in influenza A virus replication is still unknown. Knockdown of COPI constituents could directly affect transport of viral glycoproteins to the plasma membrane. This hypothesis is supported by recent work demonstrating that anterograde transport of proteins in COPB1 knockdown cells is blocked or at least reduced (Styers et al., Rennolds et al.). Interestingly, only components of the COPI machinery have been identified in the present screen. The involvement of COPII vesicles in normal trafficking of membrane proteins from the ER to the plasma membrane could hint to other functions of COPI during influenza A virus infection including maintenance of the steady-state distribution of Golgi proteins or ER quality control mechanisms (Tu et al., Zerangue et al.). In this scenario, knockdown of COPI proteins would result in incorrect folding or incorrect glycosylation of viral proteins including HA and NA, which either reduce transport of these proteins to the plasma membrane or interfere with the normal function of these proteins. Detailed analysis is on the way to clarify the role of COPI proteins during influenza virus infection.

In summary, these findings highlight the significance of our screen. Many molecular functions of the host cell known, or expected, to play important roles in influenza virus replication were recovered in our analysis. As an extension to previous RNAi-based viral screens (13, 14, 16, 17), which report single functional categories, our findings reveal a range of different molecular networks.

Methods

Summary: siRNA Screening

All siRNAs (4 l/well, 200 nM) were arrayed in 384-well plates. To each well, 8 μl of RPMI medium (Invitrogen, Karlsruhe, Germany) containing 0.35 μl HiperFect (Qiagen) was added and plates were shaken for 1 min. After 10 min incubation at room temperature (RT), a cell suspension (28 μl) of 500 cells was added to give a final siRNA concentration of 20 nM. Cells were incubated at 37° C. and 5% CO₂ for 48 h before infection at MOI 0.12. At 24 hours post infection (p.i.), supernatants were transferred onto freshly seeded 293T reporter cells, incubated for 16 h at 37° C. and 5% CO₂ and then luciferase activities were measured. The A549 cells were fixed, stained for nuclei and NP, and analysed using the Acumen ^(e)X3 Cytometer (TTP Labtech, Royston, U.K.). All multiwell pipetting steps were performed using a Biomek® FX^(P) Laboratory Automation Workstation (Beckman Coulter, Krefeld, Germany). An siRNA library (Qiagen Hu_Genome 1.0 and Human Druggable Genome siRNA Set V2.0; Qiagen, Hilden, Germany) containing four siRNAs per gene for the druggable genome (25) and two siRNAs per gene for non-druggable and predicted genes was screened three times independently. The following siRNAs with the indicated target sequence were included in all screening plates as controls: siNP (5′-AAGGAUCUUAUUUCUUCGGAG-3′), (SEQ ID NO: 1) siPLKI (5-CACCATATGAATTGTACAGAA-3′) (SEQ ID NO: 2) and Allstars (Qiagen, Hilden, Germany).

Cells and Viruses

The A549 human lung epithelial cell line (CCL-185, ATCC-LGC, Wesel, Germany) was grown in DMEM media (Invitrogen, Karlsruhe, Germany) supplemented with 4 mM L-glutamine, 4 mM sodium pyruvate, 100 U/ml penicillin/streptomycin and 10% fetal calf serum (FCS, Biochrome, Berlin, Germany) (DMEM complete medium), at 37° C. and 5% CO₂. The human embryonic kidney cell line 293T (CRL-11268, ATCC-LGC) and the Madin Darby Canine Kidney cells (MDCK, CCL-34, ATCC-LGC) were grown in DMEM supplemented with 4 mM L-glutamine, 100 U/ml penicillin/streptomycin and 10% FCS. Primary normal human bronchial epithelial cells (NHBE, CC-2541, Lonza, Cologne, Germany) were grown in Clonetics® BEGM® BulletKit® (CC-3170, Lonza) supplemented with the following growth supplements: BPE, Hydrocortisone, hEGF, Epinephrine, Transferrin, Insulin, Retinoic Acid, Triiodothyronine, GA-1000. Supplements added at 0.5 ml/500 ml medium, except BPE (2 ml/500 ml). Cells were regularly checked for mycoplasma contamination by PCR. The influenza virus strains A/WSN/33 (H1N1) and A/Puerto Rico/8/34 (H1N1) were grown in the allantoic cavities of 11-day-old embryonated chicken eggs. Production of recombinant highly pathogenic influenza A/Vietnam/1203/2004 virus (H5N1) by reverse genetics was done essentially as described previously (26). The pandemic H1N1 A/Hamburg/04/2009 strain was provided by S. Becker (Philipps University, Marburg, Germany) and was propagated in MDCK cells in DMEM supplemented with 1 μg trypsin/ml in the absence of FCS. Virus stocks were titrated by standard plaque assay on MDCK cells using an agar overlay medium (27).

siRNA Screening

All siRNAs (4 μl/well, 200 nM) were arrayed in 384-well plates. To each well, 8 μl of RPMI medium (Invitrogen, Karlsruhe, Germany) containing 0.35 μl HiperFect (Qiagen) was added and plates were shaken for 1 min. After 10 min incubation at room temperature (RT), a cell suspension (28 μl) containing 500 cells was added to give a final siRNA concentration of 20 nM. Cells were incubated at 37° C. and 5% CO₂ for 48 h before infection at an MOI of 0.12 (see below). At 24 hours post infection (p.i.), supernatants were transferred onto freshly seeded 293T reporter cells, incubated for 16 h at 37° C. and 5% CO₂ and then luciferase activities were measured (see below). The A549 cells were fixed, stained for nuclei and NP, and analysed using the Acumen ^(e)X3 Cytometer (TTP Labtech, Royston, UK). The number of automatically counted nuclei was further used to estimate cytotoxic effects of specific siRNAs. The siRNA was classified as being toxic, if 750 or fewer nuclei were determined within one well of a 384-well plate. All multiwell pipetting steps were performed using a Biomek® FX^(P) Laboratory Automation Workstation (Beckman Coulter, Krefeld, Germany). An siRNA library (Qiagen Hu_Genome 1.0 and Human Druggable Genome siRNA Set V2.0; Qiagen, Hilden, Germany) containing four siRNAs per gene for the druggable genome (25) and two siRNAs per gene for non-druggable and predicted genes, was screened three times independently. The following siRNAs with the indicated target sequence were included in all screening plates as controls: siNP (5′-AAGGAUCUUAUUUCUUCGGAG-3′), siPLK1 (5′-CACCATATGAATTGTACAGAA-3′) and Allstars (Qiagen, Hilden, Germany).

Luciferase Reporter Assay

To quantify infectious viruses in the supernatants of siRNA transfected A549 cells during the primary RNAi screen, we used a luciferase-based reporter system. 293T cells were transfected in batches with a FluA luc plasmid (6), one day later seeded into 384-well plates at concentrations of 1×10⁴/well, and subsequently infected with 12.5 μl of virus containing supernatant. At 16 h p.i., Bright-Glo™ firefly luciferase substrate (Promega, Madison, Wis., USA) was added and luciferase activities in cell lysates were measured using the Envision multilabel plate reader (PerkinElmer, Rodgau, Germany). Transfection of 239T cells with the influenza virus-specific luciferase construct (FlaA) induces expression of firefly luciferase transcripts flanked by the untranslated region of the influenza A/WSN/33 virus nucleoprotein (NP) segment. Luciferase expression is therefore only detectable in the presence of the viral polymerase, thus allowing quantification of infectious viruses.

siRNA Transfection for Validation Experiments in 96- and 12-Well Plates

All siRNAs were purchased from Qiagen. For siRNA transfection of A549 cells in 96-well plates, 20 μl of a 100 nM siRNA dilution in DMEM w/o supplements was mixed with 1 μl HiperFect+9 μl DMEM medium and incubated for 10 min at RT. Complex formation was stopped by addition of 25 μl DMEM complete medium. Next, 3000 A549 cells in 50 μl DMEM complete medium were seeded into each well and incubated at 37° C. and 5% CO₂ for the indicated time periods. For siRNA transfection of NHBE cells in 96-well plates, BEGM medium (with/without supplements) was used and 15,000 cells/well were seeded. For Western blot experiments, siRNA transfection was carried out in 12-well plates. For each well, 1 μl of a 20 μM siRNA solution was diluted in 99 μl RPMI (Invitrogen) supplemented with 25 mM HEPES (Invitrogen). The mix was incubated at RT for 5 min before addition of 5 μl HiperFect (Qiagen) and further 15 min incubation at RT. Each complex was added to 50,000 A549 cells in 900 μl DMEM complete medium, mixed carefully, and then transferred to 12-well plates. After 6 h incubation at 37° C. and 5% CO₂, the medium was exchanged for fresh DMEM complete medium and the cells were incubated for an additional 48 h using the same growth conditions.

Indirect Immunofluorescence Labeling

Cells were fixed with 3.7% formaldehyde and permeabilised with 0.3% Triton X-100, 10% FCS in PBS. Samples were sequentially incubated with a primary antibody against the viral nucleoprotein (NP, clone AA5H, AbD Serotec, UK) diluted 1:10000 in PBS with 10% FCS, 0.1% Tween 20 for 1 h at RT, followed by an incubation with the secondary Cy3 conjugated antibody directed against mouse IgG (1:100 in PBS with 10% FCS, 0.1% Tween 20 and 0.1% Hoechst dye used to stain cellular DNA). Numbers of infected versus non-infected cells were determined using automated microscopy (Olympus, Soft Imaging Solutions, München, Germany) or, for the primary siRNA screen, the Acumen eX3 microplate cytometer (TTP LabTech, Melbourn, UK).

Automated Microscopy and Image Analysis

The numbers of influenza infected and host cells were determined using an automated microscope (Olympus Soft Imaging Solutions). Images were taken with DAPI and Cy3 filter sets (AHF-Analysetechnik, Tübingen, Germany). Scan^R Analysis Software (Olympus Soft Imaging Solutions) was used to automatically identify and quantify influenza nuclear protein (NP) and cell nuclei. For determination of NP localisation, mean and total intensities of NP were analysed. NP located within the same area as the Hoechst staining was defined as nuclear NP. NP located within a 5-pixel-wide ring around the nuclei was defined as cytosolic NP. The distance between the inner edge of the ring and the nuclei was set at 1 pixel. For each experiments identical camera setting were used.

Host Cell Viability Determination by WST-1 Assay

Determination of host cell viability upon siRNA transfection was performed using cell proliferation assay WST-1 (Roche, Mannheim, Germany). WST-1 reagent was added to the cells 48 h after siRNA transfection and incubated at 37° C. for 1.5 h. Absorbance was measured at 460 nm and at the reference wavelength 590 nm. Non-targeting siRNA Allstars and siPLK1 were used as a positive and negative control, respectively.

Virus Infection

Cells were washed with PBS and then infected with influenza at the indicated MOIs in infection buffer (PBS supplemented with 0.2% bovine serum albumin) for 60 min at RT. Cells were washed again (in infection buffer) and incubated for the indicated time periods at 37° C. in DMEM supplemented with 0.2% bovine serum albumin, 4 mM L-glutamine and antibiotics (A549) or BEGM with supplements (NHBE), unless otherwise stated. All infection experiments with A/WSN/33, A/Puerto Rico/8/34 and with A/Hamburg/04/2009 H1N1 viruses were performed under biosafety level (BSL) 2 conditions, whereas BSL 3 conditions were used for experiments with A/Vietnam/1203/2004 (HN51).

Replication Assay

To quantify infectious virus particles in infected cell culture supernatants, 5,000 or 12,000 MDCK cells were seeded in 384- or 96-well plates, respectively. One day later the cells were washed twice, infected with a dilution series of cell culture supernatants and incubated at RT for 1 h. Infection buffer (as above) was added (40 μl or 100 μl/well) and plates were incubated at 37° C., 5% CO₂ for 6 h, followed by fixation with 3.7% formaldehyde, antibody staining and automatic image processing, as described in ‘Indirect immunofluorescence labeling’.

Gene Enrichment and Network Analysis

For gene enrichment analysis, we modified the R-script available from the Gaggle web site (http://gaggle.systemsbiology.net/svn/gaggle/PIPE2.0/trunk/PIPEletResource Dir/GOTableEnrichment/GOEnrichmentScript.R). This script applies the R-package GOstats developed by Falcon, S, and Gentleman, R. (28) and is available at the Bioconductor web site (http://www.bioconductor.org). Briefly, we defined a gene universe consisting of 22843 genes contained and annotated in the genome-wide library and processed the hit list against this universe with respect to molecular function (MF), cellular component (CC) and biological process (BP). Each Gene Ontology term is associated with X number of genes, providing a relative frequency A. In the hit list, the same term is connected to Y genes giving a relative frequency B. B divided by A is the enrichment factor.

The 287 ‘high-confidence’ hits were also uploaded as gene-identifiers using the Sky-Painter tool of the Reactome website (www.reactome.org). Significant events calculated by the application's Fisher's exact test were identified and coloured accordingly. Network analysis was carried out using the STRING database (http://string.embl.de/).

Confocal Microscopy

Fusion between influenza viruses and cellular endosomes was detected using confocal microscopy. A549 cells were plated onto cover slips in 12-well plates at a density of 5×10⁴ cells/well and directly transfected in suspension with indicated siRNAs, followed by infection with influenza A/WSN/33 virus (MOI 10) 48 h post transfection. During the infection process, cells were kept on ice for 45 min, washed twice with cold infection buffer (see above) and subsequently incubated with pre-warmed infection media (DMEM supplemented with 0.2% bovine serum albumin, 4 mM L-glutamine and antibiotics). After 15, 45 and 90 min cells were fixed with 4% paraformaldehyde and permeabilised for 20 min with 0.2% BSA in PBS and 0.2% Triton X-100. Cells were then incubated for 1 h with antibodies targeting CD63 (Millipore) at a dilution of 1:70 and a polyclonal serum against influenza (1:1000), followed by incubation with a fluorescently labelled secondary antibody (dilution 1:100). Samples were mounted in MOWIOL. Images were taken with a Leica TCS-SP confocal microscope and processed using Adobe Photoshop 11.0.

Immunoblotting

For immunoblotting, cells were washed with PBS and lysed in 1×SDS sample buffer containing 75 mM Tris HCl (pH 6.8), 25% glycerol, 0.6% SDS, 7.5% β-mercaptoethanol and 0.001% bromphenol blue. Protein lysates (20 μl) were loaded and separated on a 10% SDS-polyacrylamide gel. Separated proteins were transferred to a PVDF membrane and detected using mouse monoclonal antibodies against viral matrix protein (M1, AbD Serotec, UK), viral ion channel protein (M2,Santa Cruz) or β-actin (Sigma, Germany) at 1:100, 1:1000 or 1:2500 dilution, respectively, followed by incubation with a secondary sheep anti-mouse IgG Horseradish peroxidase (1:10000). Staining was performed with ECL Western Blotting Detection Reagent (Amersham, Piscataway, N.J., USA). β-actin was used as a loading control. Band intensities were determined using the Aida image analyzer (V.4.03) (2D/Densitometry) and normalised to β-actin.

Quantitative RT-PCR

For the detection of viral RNA (vRNA) or viral mRNA, quantitative RT-PCR (qRT-PCR) was performed as previously described (7). Briefly, A549 cells infected with influenza A/WSN/33 virus (MOI 1) were lysed with RLT lysis buffer (Qiagen, Hilden, Germany). For reverse transcription of viral mRNA, an oligo(dT)18 primer was used: the negative stranded vRNA of the gene segment PA was converted to cDNA using a PA-specific oligonucleotide (5′-GCTTCTTATCGTTCAGGCTCTTAGG-3′) (SEQ ID NO: 3). Resulting cDNAs were quantified by qRT-PCR with oligonucleotides specific for PA (5′-GCTTCTTATCGTTCAGGCTCTTAGG-3′(SEQ ID NO: 3) and 5′-CCGAGAAGCATTAAGCAAAACCCAG-3′) (SEQ ID NO: 4). GAPDH was amplified using the oligonucleotides, GAPDH for: 5′-GGTATCGTGGAAGGACTCATGAC-3′ (SEQ ID NO: 5); GAPDH_rev: 5′-ATGCCAGTGAGCTTCCCGTTCAG-3′(SEQ ID NO: 6). Levels of GAPDH were used for normalisation. All experiments were done in triplicate. To quantify the levels of spliced and unspliced mRNAs, infection of A549 cells with influenza A/WSN/33 virus was performed at an MOI of 4 for 5 h. RNA was then isolated using the RNeasy Mini Kit (Qiagen) and treated with DNase (Ambion) according to manufacturer's instructions. Reverse transcription of viral mRNA was performed using oligo(dT) primer and the synthesised cDNA was subjected to real-time PCR using primers specific for M1 (5′-GACCAATCCTGTCACCTC-3′(SEQ ID NO: 7) and 5′-GATCTCCGTTCCCATTAAGAG-3′) (SEQ ID NO: 8) and M2 (5-GAGGTCGAAACGCCTAT-3′(SEQ ID NO: 9) and 5′-CTCCAGCTCTATGTTGACAAA-3′) (SEQ ID NO: 10), as described previously (29). Levels of M1 and M2 mRNA were normalised to GAPDH.

Validation of RNAi by Quantitative PCR

siRNA validation was performed as previously described (30). Briefly, one day before transfection 3,000 cells per well were seeded onto a 96-well plate. Transfection was performed with a final siRNA concentration of 56 nM with 0.25 μl HiPerFect(Qiagen). Knockdown measurements were performed independently three times. After 48 h, RNA was isolated using the RNeasy 96 BioRobot 8000 system (Qiagen). The relative amount of target mRNA was determined by quantitative PCR using the Quantitect SYBR Green RT-PCR kit following the manufacturer's instructions (Qiagen) and the following primers:

GAPDH forward 5′-GGTATCGTGGAAGGACTCATGAC-3′, (SEQ ID NO: 5) GAPDH reverse 5′-ATGCCAGTGAGCTTCCCGTTCAG-3′, (SEQ ID NO: 6) ATP6V0D1 forward 5′-TGTCGCAACATCGTGTGGAT-3′, (SEQ ID NO: 11) ATP6V0D1 reverse 5′-GAGTGCAATTGAGAGCCTTGG-3′, (SEQ ID NO: 12) COPG forward 5′-TCCGCTATGCTGCTGTTCGTA-3′, (SEQ ID NO: 13) COPG reverse 5′-GCGGTTTGAATCTGTGACCAG-3′, (SEQ ID NO: 14) EIF4A3 forward 5′-TGATCTTGGCTCCCACAAGAG-3′, (SEQ ID NO: 15) EIF4A3 reverse 5′-ATTGGTGCCTCCAATGCAG-3′, (SEQ ID NO: 16) NUP98 forward 5′-TTCCGGAATCCGATGTCAGA-3′, (SEQ ID NO: 17) NUP98 reverse 5′-TGTAAAGCCTTTGGCCGGACT-3′, (SEQ ID NO: 18) NUP205 forward 5′-ACCTTCGGAAGGATCTTCCAA-3′; (SEQ ID NO: 19) NUP205 reverse 5′-GGAGTCCCAGAATCACCACAA-3′; (SEQ ID NO: 20) NXF1 forward 5′-TGAGCAAACGATACGATGGC-3′, (SEQ ID NO: 21) NXF1 reverse 5′-TCTGCGATTCAGGACAACGTC-3′, (SEQ ID NO: 22) SON forward 5′-CAAGCCTTAGAGCTGGCATTG-3′, (SEQ ID NO: 23) SON reverse 5′-GCTTGCGTGATTTGTGTTCAG-3′, (SEQ ID NO: 24)

The relative expression levels of target mRNA were normalized against control transfected cells. GAPDH was used as an internal standard.

Chemical Inhibitors

The chemical inhibitor TG003 (Sigma-Aldrich, Munich, Germany) directed against the kinase CLK1 was dissolved in DMSO to a concentration of 10 mM.

Animal Experiments

Animals were housed and bred under pathogen free conditions, biosafety level 2 according to German Animal Protection Law (Tierschutzgesetz TierSchG). Animal testing was approved by the local authorities (Landesamt für Gesundheit and Soziales Berlin LAGeSo: Reference number G0217/08). C57BL/6/J and p27^(−/−) mice (B6.129S4-Cdkn1b^(tm1Mlf)/J) were provided by Charles River (Sulzfeld, Germany) or bred in house, respectively. Mice aged between 7 and 15 weeks were intranasally infected with influenza A/Puerto Rico/8/34 virus (10×LD₅₀; in 50 μl PBS). Two days later, lungs of infected animals were isolated and homogenised, followed by centrifugation at 800×g for 8 min at 4° C. The amount of infectious viruses in the supernatant was quantified using the replication assay (see above). Proteins for use in immunoblotting experiments were obtained by adding TRIZOL Reagent (GIBCO BRL) to the remaining cell pellet, according to the manufacturer's instructions.

Data Analysis

For identification of primary hits, three parameters were included: luciferase expression, the percentage of infected cells as determined by immunofluorescence microscopy, and the total number of infected cells. The latter parameter was informative because the number of viruses per well correlated with the number of infected cells, with minor influence of cells present. To maximize the robustness of the hit selection and to minimize false positives due to off-target effects, raw screening data from all three parameters were subjected separately to an analysis pipeline incorporating statistical checkpoints at each step (FIG. 8). First, we excluded non-expressed genes by determining constitutive or inducible expression via microarray profiling of non-infected and infected A549 samples (5814 genes were not expressed). Second, we excluded toxic siRNAs which reduced total cell numbers (<750 cells/well) upon transfection were also excluded (1520 siRNAs) using the microscopic assay applied throughout the primary screen. Third, non-toxic siRNAs targeting expressed genes were further analysed. For statistical analysis of luciferase assay data obtained from the genome-wide screen, the following plate-wise quality control criteria were used: (i) the average signal from the non-targeting control wells (Allstars) was greater than 10,000 counts, and (ii) the difference in signal strength between the non-targeting control (Allstars) and (iii) the inhibitory control (NP) was at least two orders of magnitude. Using Genedata's Screener® software (www.genedata.com), we excluded wells with phenotypes attributable to positional effects. The revised raw data were subjected to statistical analysis using cellHTS (31), an R-implemented software package for the analysis of cell-based high-throughput RNAi screen data. Raw data were normalised using the B-score method to further exclude positional effects (32). Next, a z-score transformation was applied to center and scale the plate-wise data. The z-scores were calculated using the following equation:

$z = {\frac{X - \mu}{\sigma}.}$ where X is a raw score to be standardized, σ is the standard deviation of the population, and μ is the mean of the population. The medians of the centered and scaled values of at least three independent replicates were used for redundant siRNA activity (RSA) analysis (33), which applies a rank-based hypergeometric distribution test to identify hits. Only genes for which two corresponding siRNAs were scored as hits were analysed further. Next, Genedata's Screener® package was used to select all genes with a robust z-score of less than −2.

For the analysis of the hit validation data, for each siRNA the normalised percent inhibition of infectious virus particles was calculated. Briefly, the difference of each sample value subtracted from the median of the non-targeting control (Allstars) values of the particular plate was divided by the difference of the medians of the non-targeting control and the inhibitory control (siNP). An 80% normalised inhibition threshold was applied. Genes were scored as validated hits if at least two siRNAs, which did not impair cell viability, fulfilled this criteria.

The ratios of cytosolic to nuclear NP at 5 h p.i. and levels of total NP at 3 h p.i. in samples tested were non-normally distributed. Therefore, to assess the significance of differences between distributions of the target knockdown samples and non-targeting control reference samples (Allstars), we applied the minimal distance estimation Kolmogorov-Smirnov test using the statistical software environment R (http://www.r-project.org/). The samples sizes are individually defined as the number of main objects per well detected by the automated image analysis package Scan^R.

Significant differences in the amount of infectious viruses gained from the lungs of p27^(−/−) and control mice were tested using a one-tailed t-test assuming different standard deviations for the samples and the controls (Welch-test).

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TABLE 3 GeneSymbol LocusID Gene Description siRN1 ID s iRNA2 ID siRNA3 ID AAMP 14 angio-associated, migratory cell protein Hs_AAMP_1 Hs_AAMP_3 Hs_AAMP_4 ACTN1 87 ACTIMIN, ALPHA 1 Hs_ACTN1_13 Hs_ACTN1_8 Hs_ACTN1_7 AHCYL1 18768 S-ADENOSYLHOMOCYSTEINE HYDROLASE-LIKE 1 HS_AHCYL1_4 HS_AHCYL1_2 HS_AHCYL1_3 AIG1 51390 ANDROGEN-INDUCED 1 Hs_AIG1_5 Hs_AIG1_6 Hs_AIG1_4 AKR1C4 1199 ALDO-KETO REDUCTASE FAMILY 1, MEMBER C4 (CHLORDECONE REDUCTASE; 3- Hs_AKR1C4_3 Hs_AKR1C4_2 Hs_AKR1C4_1 ALPHA HYDROXYSTEROID DEHYDROGENASE, TYPE I; DIHYDRODIDL DEHYDROGENASE 4) AKTIP 64400 AKT interacting protein Hs_FTS_1 Hs_FTS_2 Hs_FTS_3 ALDH7A1 581 ALDEHYDE DEHYDROGENASE 7 FAMILY, MEMBER A1 Hs_ALDH7A1_1 Hs_ALDH7A1_4 Hs_ALDH7A1_2 ALX4 69529 ARISTALESS-LIKE HOMEOBOX 4 Hs_ALX4_3 Hs_ALX4_2 Hs_ALX4_1 AP2M1 1173 adaptor-related protein complex 2, mu 1 subunit Hs_AP2M1_7 Hs_AP2M1_3 Hs_AP2M1_5 APBB1IP 54518 AMYLOID BETA (A4) PRECURSOR PROTEIN-BINDING, FAMILY B, MEMBER 1 Hs_APBB1IP_3 Hs_APBB1IP_8 Hs_APBB1IP_7 INTERACTING PROTEIN ARD1A 8260 ARD1 homolog A, N-acetyltransferase (S. cerevisiae) Hs_ARD1_1 Hs_ARD1_3 Hs_ARD1_5 ARTN 9948 ARTEMIN Hs_ARTN_8 Hs_ARTN_7 Hs_ARTN_9 ASAH3L 348485 N-acylsphingosine amidohydrolase 3-like Hs_ASAH3L_1 Hs_ASAH3L_2 Hs_ASAH3L_3 ATCAY 85300 ATAXIA, CEREBELLAR, CAYMAN TYPE (CAYTAXIN) Hs_ATCAY_2 Hs_ATCAY_3 Hs_ATCAY_4 ATP1A2 477 ATPase, Na+/K+ transporting, alpha 2 (+) polypeptide Hs_ATP1A2_2 Hs_ATP1A2_3 Hs_ATP1A2_4 ATP6AP1 537 ATPase, H+ transporting, lysosomal accessory protein 1 Hs_ATP6AP1_5 Hs_ATP6AP1_6 Hs_ATP6AP1_7 ATP6AP2 10159 ATPASE, H+ TRANSPORTING, LYSOSOMAL ACCESSORY PROTEIN 2 Hs_ATP6AP2_7 Hs_ATP6AP2_8 Hs_ATP6AP2_6 ATP6V9C 527 ATPASE, H+ TRANSPORTING, LYSOSOMAL 16KDA, V8 SUBUNIT C Hs_ATP6V9C_7 Hs_ATP6V9C_8 Hs_ATP6V9C_6 ATP6V9D1 9114 ATPase, H+ transporting, lysosomal 38 kDa, V8 subunit d1 Hs_ATP6V9D1_1 Hs_ATP6V9D1_2 Hs_ATP6V9D1_3 ATP6V1A 523 ATPASE, H+ TRANSPORTING, LYSOSOMAL 78 KDA, V1 SUBUNIT A Hs_ATP6V1A_1 Hs_ATP6V1A_3 Hs_ATP6V1A_2 ATP6V1B2 526 ATPASE, H+ TRANSPORTING, LYSOSOMAL 56/58 KDA, V1 SUBUNIT B2 Hs_ATP6V1B2_2 Hs_ATP6V1B2_4 Hs_ATP6V1B2_5 AZIN1 51582 ANTIZYME INHIBITOR 1 Hs_DAZIN_4 Hs_DAZIN_2 Hs_DAZIN_1 B2M 567 beta-2-microglobulin Hs_B2M_3 Hs_B2M_4 Hs_B2M_5 B3GNT1 11041 UDP-GLCNAC:BETAGAL BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 6 Hs_B3GNT1_5 Hs_B3GNT1_7 Hs_B3GNT1_8 BAIAP3 8938 BAI1-associated protein 3 Hs_BAIAP3_1 Hs_BAIAP3_2 Hs_BAIAP3_5 BARHL2 343472 BARH-LIKE 2 (DROSOPHILA) Hs_BARHL2_3 Hs_BARHL2_7 Hs_BARHL2_6 BNIP3L 665 BCL2/ADENOVIRUS E1B 19 KDA INTERACTING PROTEIN 3-LIKE Hs_BNIP3L_7 Hs_BNIP3L_12 Hs_BNIP3L_10 BRUNOL6 60677 BRUNO-LIKE 6, RNA BINDING PROTEIN (DROSOPHILA) Hs_BRUNOL6_8 Hs_BRUNOL6_7 Hs_BRUNOL6_5 BZRAP1 9256 benzodiazapine receptor (peripheral) associated protein 1 Hs_BZRAP1_1 Hs_BZRAP1_2 Hs_BZRAP1_4 C14orf172 115708 CHROMOSOME 14 OPEN READING FRAME 172 Hs_C14orf172_1 Hs_C14orf172_4 Hs_C14orf172_3 C19orf47 126526 HYPOTHETICAL PROTEIN FLJ36888 Hs_FLJ36888_5 Hs_FLJ36888_4 Hs_C19orf47_1 C21orf7 56911 chromosome 21 open reading fram 7 Hs_C21orf7_1 Hs_C21orf7_2 Hs_C21orf7_3 C3orf31 132001 chromosome 3 open reading fram 31 Hs_C3orf31_1 Hs_C3orf31_2 Hs_C3orf31_3 C4orf29 80167 HYPOTHETICAL PROTEIN FLJ21106 Hs_C4orf29_3 Hs_C4orf29_2 Hs_C4orf29_1 CARD9 64170 caspase recruitment domain family, member 9 Hs_CARD9_1 Hs_CARD9_2 Hs_CARD9_3 CASPBAP2 9994 CASP8 ASSOCIATED PROTEIN 2 Hs_CASPBAP2_5 Hs_CASPBAP2_3 Hs_CASPBAP2_6 CCNB3 85417 cyclin B3 Hs_CCNB3_7 Hs_CCNB3_6 Hs_CCNB3_8 CD48 962 CD48 molecule Hs_CD48_1 Hs_CD48_2 Hs_CD48_3 CD58 965 CD58 molecule Hs_CD58_2 Hs_CD58_5 Hs_CD58_6 CD6 923 CD6 ANTIGEN Hs_CD6_1 Hs_CD6_2 Hs_CD6_3 CD63 967 CD63 molecule Hs_CD63_10 Hs_CD63_7 Hs_CD63_8 CD81 975 CD81 molecule Hs_CD81_10 Hs_CD81_11 Hs_CD81_8 CDC23 8697 CDC23 (CELL DIVISION CYCLE 23, YEAST, HOMOLOG) Hs_CDC23_5 Hs_CDC23_4 Hs_CDC23_7 CDK4 1019 CYCLIN-DEPENDENT KINASE 4 Hs_CDK4_9 Hs_CDK4_6 Hs_CDK4_4 CDKN1B 1027 CYCLIN-DEPENDENT KINASE INHIBITOR 1B (P27, KIP1) Hs_CDKN1B_6 Hs_CDKN1B_3 Hs_CDKN1B_8 CEL 1056 carboxyl ester lipase (bile salt-stimulated lipase) Hs_CEL_1 Hs_CEL_3 Hs_CEL_5 CHST5 23563 carbohydrate (N-acetylglucosamine 5-0) sulfotransferease 5 Hs_CHST5_2 Hs_CHST5_5 Hs_CHST5_7 CLIC4 25932 chloride intracellular channel 4 Hs_CLIC4_5 Hs_CLIC4_2 Hs_CLIC4_3 CLK1 1195 CDC-LIKE KINASE 1 HS_CKLK1_1 HS_CLK1_11 HS_CKL1_2 CNNM1 26507 cyclin M1 Hs_CNNM1_3 Hs_CNNM1_5 Hs_CNNM1_6 COPA 1314 coatomer protein complex, subunit alpha Hs_COPA_5 Hs_COPA_6 Hs_COPA_7 COPB1 1315 coatomer protein complex, subunit beta 1 Hs_COPB_5 Hs_COPB1_4 Hs_COPAB1_5 COPB2 9276 coatomer protein complex, subunit beta 2 (beta prime) Hs_COPB2_6 Hs_COPB2_7 HS_COPB2_1 COPG 22820 coatomer protein complex, subunit gamma Hs_COPG_1 Hs_COPG_5 Hs_COPG_6 CRAMP1L 57585 Crm, cramped-like (Drosophila) Hs_CRAMP1L_1 Hs_CRAMP1L_2 Hs_CRAMP1L_7 CRYAA 1409 crystallin, alpha A Hs_CRYAA_1 Hs_CRYAA_2 Hs_CRYAA_3 CTA-216E10.6 79640 HYPOTHETICAL PROTEIN FLJ23584 Hs_CTA-216E10.6_1 Hs_CTA-216E10.6_3 Hs_CTA-216E10.6_2 CUEDC2 79004 CUE DOMAIN CONTAINING 2 Hs_CUEDC2_5 Hs_CUEDC2_6 Hs_CUEDC2_4 CXCR6 10663 chemokine (C-X-C motif) receptor 6 Hs_CXCR6_1 Hs_CXCR6_2 Hs_CXCR6_3 CYC1 1537 CYTOCHROME C-1 Hs_CRC1_1 Hs_CYC1_2 Hs_CYC1_3 CYP17A1 1586 cytochrome P450, family 17, subfamily A, polypeptide 1 Hs_CYP17A1_1 Hs_CYP17A1_2 Hs_CYP17A1_3 CYP2U1 113612 cytochrome P450, family 2, subfamily U, polypeptide 1 Hs_CYP2U1_1 Hs_CYP2U1_2 Hs_CYP2U1_3 DBT 1629 dihydroliposmide branched chain transacylase E2 Hs_DBT_2 Hs_DBT_4 Hs_DBT_5 DCLK2 166614 doublecortin-like kinase 2 Hs_DCAMKL2_2 Hs_DCAMKL2_3 Hs_DCAMKL2_5 DGKH 169851 diacylglycerol kinase, eta Hs_DGKH_1 Hs_DGKH_4 Hs_DGKH_5 DGUDK 1716 DEOXYGUANOSINE KINASE Hs_DGUDK_7 Hs_DGUDK_6 Hs_DGUDK_1 DHRS2 10202 dehydrogenase/reductase (SDR family) member 2 Hs_DHRS2_6 Hs_DHRS2_9 Hs_DHRS2_3 DLG2 1740 discs, large homolog 2 (Drosophila) Hs_DLG2_2 Hs_DLG2_5 NA DMAP1 55929 DNA METHYLTRANSFERASE 1 ASSOCIATED PROTEIN 1 Hs_DMAP1_6 Hs_DMAP1_5 Hs_DMAP1_4 DMRT1 1761 DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR 1 Hs_DMRT1_3 Hs_DMRT1_7 Hs_DMRT1_8 DTX3 196403 deltex homolog 3 (Drosophila) Hs_DTX3_4 Hs_DTX3_5 Hs_DTX3_6 DUSP27 92235 dual specificity phosphatase 27 (putative) Hs_DUSP27_1 Hs_DUSP27_2 Hs_DUSP27_3 E2F1 1869 E2F TRANSCRIPTION FACTOR 1 Hs_E2F1_3 Hs_E2F1_4 Hs_E2F1_7 EEF1A1 1915 eukaryotic translation elongation factor 1 alpha 1 Hs_EEF1A1_10 Hs_EEF1A1_11 Hs_EEF1A1_12 EIF3A 8661 eukaryotic translation initiation factor 3, subunit A Hs_EIF3S10_6 Hs_EIF3S10_2 Hs_EIF3S10_7 EIF3C 8683 eukaryotic translation initiation factor 3, subunit C Hs_EIF3S8_5 Hs_EIF3S8_6 Hs_EIF3S8_1 EIF3G 8666 eukaryotic translation initiation factor 3, subunit G Hs_EIF3S4_1 Hs_EIF3S4_10 Hs_EIF3S4_2 EIF4A3 9775 eukaryotic translation initiation factor 4a, isoform 3 Hs_DDX48_3 Hs_DDX48_4 Hs_DDX48_5 ENGASE 64772 endo-beta-N-acetylglucosaminidase Hs_FLJ21865_1 Hs_FLJ21865_5 Hs_FLJ21865_6 EPB49 2039 erythrocyte membrane protein band 4.9 (dematin) Hs_EPB49_1 Hs_EPB49_2 Hs_EPB49_3 EPHB6 2051 EPH RECEPTOR B6 Hs_EPHB6_3 Hs_EPHB6_4 Hs_EPHB6_6 ERN2 10595 ENDOPLASMIC RETICULUM TO NUCLEUS SIGNALLING 2 Hs_ERN2_10 Hs_ERN2_4 Hs_ERN2_3 FAU 2197 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously Hs_FAU_2 Hs_FAU_4 Hs_FAU_5 expressed FBXW10 10517 F-box and WD repeat domain containing 10 Hs_FBXW10_11 Hs_FBXW10_3 Hs_FBXW10_6 FCH02 115548 FCH DOMAIN ONLY 2 Hs_FCH02_3 Hs_FCH02_8 Hs_FCH02_7 FCRL6 343413 Fc receptor-like 6 Hs_LOC343413_3 Hs_LOC343413_4 Hs_FCRL6_1 FERMT3 83796 fermitin family homolog 3 (Drosophila) Hs_URP2_4 Hs_URP2_5 Hs_URP2_6 FGF3 2248 FIBROBLAST GROWTH FACTOR 3 (MURINE MAMMARY TUMOR VIRUS INTEGRATION Hs_FGF3_3 Hs_FGF3_4 Hs_FGF3_6 SITE (V-INT-2) ONCOGENE HOMOLOG) FLJ11235 54588 hypothetical FLJ11235 Hs_FLJ11235_1 Hs_FLJ11235_2 Hs_FLJ11235_3 FLJ20489 55652 HYPOTHETICAL PROTEIN FLJ20489 Hs_FLJ20489_3 Hs_FLJ20489_4 Hs_FLJ20489_5 FLJ34077 484033 weakly similar to zinc finger protein 195 Hs_FLJ34077_1 Hs_FLJ34077_2 Hs_FLJ34077_3 FNTB 2342 FARNESYLTRANSFERASE, CAAX BOX, BETA Hs_FNTB_7 Hs_FNTB_1 Hs_FNTB_10 G6PC 2538 GLUCOSE-6-PHOSPHATEASE, CATALYTIC (GLYCOBEN STORAGE DISEASE TYPE I, Hs_G6PC_3 Hs_G6PC_1 Hs_G6PC_6 VON GIERKE DISEASE) GLCL 2729 GLUTAMATE-CYSTEINE LIGASE, CATALYTIC SUBUNIT Hs_GCLC_4 Hs_GCLC_7 Hs_GCLC_10 GNMT 27232 glycine N-methyltransferase Hs_GNMT_2 Hs_GNMT_3 Hs_GNMT_4 GNRH2 2797 GONADOTROPIN-RELEASING HORMONE 2 Hs_GNRH2_8 Hs_GNRH2_7 Hs_GNRH2_6 GPR146 155330 6 protein-coupled receptor 146 Hs_GPR146_1 Hs_GPR146_3 Hs_GPR146_4 GRID2 2895 GLUTAMATE RECEPTOR, IONOTROPIC, DELTA 2 Hs_GRID2_3 Hs_GRID2_2 Hs_GRID2_4 GRIN2C 2005 glutamate receptor, ionotropic, N-methyl D-aspartate 2C Hs_GRIN2C_1 Hs_GRIN2C_2 Hs_GRIN2C_3 GRP 2922 GASTRIN-RELEASING PEPTIDE Hs_GRP_6 Hs_GRP_9 Hs_GRP_8 GSK3A 2931 GLYCOGEN SYNTHASE KINASE 3 ALPHA Hs_GSK3A_6 Hs_GSK3A_12 Hs_GSK3A_11 HARBI1 9776 KIAA8652 Hs_KIAA9652_7 Hs_KIAA9652_3 Hs_KIAA9652_4 HIBCH 86275 3-hydroxyisobutyryl-Coenzyme A hydrolase Hs_HIBCH_1 Hs_HIBCH_2 Hs_HIBCH_3 HIST1H2BN 8341 histone cluster 1, H2bn Hs_HIST1H2BN_10 Hs_HIST1H2BN_2 Hs_HIST1H2BN_4 HPGD 3248 hydroxyprostaglandin dehydrogenase 15-(NAD) Hs_HPGD_1 Hs_HPGD_2 Hs_HPGD_3 HSF4 3299 heat shock transcription factor 4 Hs_HSF4_1 Hs_HSF4_2 Hs_HSF4_3 HSPD1 3329 heat shock 60 kDa protein 1 (chaperonin) Hs_HSPD1_5 Hs_HSPD1_7 Hs_HSPD1_8 ICAM2 3384 INTERCELLULAR ADHESION MOLECULE 2 Hs_ICAM2_4 Hs_ICAM2_5 Hs_ICAM2_7 ICEBERG 69082 ICEBERG caspase-1 inhibitor Hs_ICEBERG_1 Hs_ICEBERG_2 Hs_ICEBERG_4 IL17RA 23765 interleukin 17 receptor A Hs_IL17R_1 Hs_IL17R_2 Hs_IL17RA_1 IL1A 3552 interleukin 1, alpha Hs_IL1A_1 Hs_IL1A_2 Hs_IL1A_3 IQCF2 389123 IQ motif containing F2 Hs_IQCF2_1 Hs_IQCF2_2 Hs_IQCF2_3 IRF2 3660 INTERFERON REGULATORY FACTOR 2 Hs_IRF2_2 Hs_IRF2_3 Hs_IRF2_1 ISG15 9636 ISG15 ubiquitin-like modifier Hs_G1P2_1 Hs_ISG15_1 Hs_ISG15_3 ITLN1 55600 intelectin 1 (galactofuranose binding) Hs_ITLN1_1 Hs_ITLN1_3 Hs_ITLN1_4 JARID1D 8284 jumonji, AT rich interactive domain 1D Hs_SMCY_1 Hs_SMCY_2 Hs_SMCY_3 JUN 3728 jun oncogene Hs_JUN_5 Hs_JUN_1 Hs_JUN_2 KATNB1 10300 katanin p80 (WD repeat containing) subunit B 1 Hs_KATNB1_1 Hs_KATNB1_2 Hs_KATNB1_3 HCNAB3 9196 POTASSIUM VOLTAGE-GATED CHANNEL, SHAKER-RELATED SUBFAMILY, BETA Hs_KCNAB3_4 Hs_KCNAB3_1 HS_KCNAB3_3 MEMBER 3 KCNJ12 3768 potassium inwardly-rectifying channel, subfamily J, member 12 Hs_KCNJ12_2 Hs_KCNJ12_4 Hs_KCNJ12_5 KIAA0664 23277 KIAA0664 Hs_KIAA0664_2 Hs_KIAA0664_3 Hs_KIAA0664_4 KIAA0947 23379 KIAA0947 PROTEIN Hs_KIAA0947_2 Hs_KIAA0947_5 Hs_KIAA0947_4 KIAA1128 54462 KIAA118 Hs_KIAA1128_4 Hs_KIAA1128_3 Hs_KIAA1128_5 KIAA1267 284958 DKFZP727C091 PROTEIN Hs_LOC284058_3 Hs_KIAA1267_2 Hs_LOC284058_4 KIF11 3832 kinesin family member 11 Hs_KIF11_6 Hs_KIF11_7 Hs_KIF11_8 KIF23 9493 KINESIN FAMILY MEMBER 23 Hs_KIF23-11 Hs_KIF23_5 Hs_KIF23_2 KIF3A 11127 kinesin family member 3A Hs_KIF3A_10 Hs_KIF3A_4 Hs_KIF3A_5 KPNB1 3837 KARYOPHERIN (IMPORTIN) BETA 1 Hs_KPNB1_2 Hs_KPNB1_3 Hs_KPNB1_6 LAMC2 3918 LAMININ, GAMMA 2 Hs_LAMC2_1 Hs_LAMC2_4 Hs_LAMC2_2 LARP1 23367 La ribunucleoprotein doman family, member 1 Hs_LARP_4 Hs_LARP1_1 Hs_LARP1_2 LHX3 0022 LIM homebox 3 Hs_LHX3_2 Hs_LHX3_3 Hs_LHX3_4 LINGO1 84894 leucine rich repeat and Ig domain containing 1 Hs_LRRN6A_1 Hs_LRRN6A_4 Hs_LRRN6A_5 LOC162993 162993 hypothetical protein LOC162993 Hs_LOC162993_1 Hs_LOC162993_2 Hs_LOC162993_3 LOC399940 399940 similar to Tripartite motif protein 49 (RING finger protein 18) Hs_LOC399940_5 Hs_LOC399940_6 Hs_LOC399940_7 (Testis-specific ring-finger protein) LOC401431 401431 hypothetical gene LOC401431 Hs_LOC401431_1 Hs_LOC401431_2 Hs_LOC401431_3 LOC440733 440733 similar to 40S ribosomal protein S15 (RIG protein) Hs_LOC440733_11 Hs_LOC440733_12 Hs_LOC440733_13 LPPR4 9899 plasticity related gene 1 Hs_LPPR4_6 Hs_LPPR4_7 Hs_LPPR4_8 MAN2B1 4125 MANNOSIDASE, ALPHA, CLASS 2B, MEMBER 1 Hs_MAN2B1_4 Hs_MAN2B1_2 Hs_MAN2B1_3 MAP2K3 5606 mitogen-activated protein kinase kinase 3 Hs_MAP2K3_5 Hs_MAP2K3_6 Hs_MAP2K3_7 MATN3 4148 matrilin 3 Hs_MATN3_1 Hs_MATN3_2 Hs_MATN3_3 MED6 10001 mediator complex subunit 6 Hs_MED6_1 Hs_MED6_2 Hs_MED6_6 MKL1 57591 MEGAKARYOBLASTIC LEUKEMIA (TRANSLOCATION) 1 Hs_MKL1_1 Hs_MKL1_8 Hs_MKL1_6 MRPS12 6183 MITOCHONDRIAL RIBOSOMAL PROTEIN S12 Hs_MRPS12_7 Hs_MRPS12_1 Hs_MRPS12_3 MYC 4609 v-myc myelocytomatosis viral oncogene homolog (avian) Hs_MYC_5 Hs_MYC_6 Hs_LOC731404_4 MYEF2 50804 MYELIN EXPRESSION FACTOR 2 Hs_MYEF2_4 Hs_MYEF2_5 Hs_MYEF2_8 MYOD1 4654 myogenic differentiation 1 Hs_MYOD1_1 Hs_MYOD1_3 Hs_MYOD1_4 NAE1 8883 AMYLOID BETA PRECURSOR PROTEIN BINDING PROTEIN 1 Hs_APPBP1_5 Hs_APPBP1_7 Hs_APPBP1_8 NDUFV3 4731 NADH DEHYDROGENASE (UBIQUINONE) FLAVOPROTEIN 3, 10 KDA Hs_NDUFV3_3 Hs_NDUFV3_4 Hs_NDUFV3_5 NECAP2 55707 NECAP ENDOCYTOSIS ASSOCIATED 2 Hs_FLJ10420_3 Hs_NECAP2_1 Hs_NECAP2_3 NEK8 284086 NIMA (never in mitosis gene a) - related kinase 8 Hs_NEK8_5 Hs_NEK8_6 Hs_NEK8_10 NEK9 91754 NIMA (never in mitosis gene a) - related kinase 9 Hs_NEK9_7 Hs_NEK9_10 Hs_NEK9_11 NSF 4905 N-ETHYLMALEIMIDE-SENSITIVE FACTOR Hs_NSF_12 Hs_NSF_11 Hs_NSF_10 NTHL1 4913 nth endonuclease III-like 1 (E. coli) Hs_NTHL1_3 Hs_NTHL1_4 Hs_NTHL1_5 NUP205 23165 nucleoporin 205 kDa Hs_NUP205_3 Hs_NUP205_4 Hs_NUP205_8 NUP98 4928 nucleoporin 98 kDa Hs_NUP98_3 Hs_NUP98_5 Hs_NUP98_7 NXF1 10482 nuclear RNA export factor 1 Hs_NXF1_1 Hs_NXF1_2 Hs_NXF1_3 ODZ4 26011 odz, odd Oz/ten-m homolog 4 (Drosophila) Hs_ODS4_2 Hs_ODS4_3 Hs_ODS4_4 OPN1SW 611 opsin 1 (cone pigments), short-wave-sensitive Hs_OPN1SW_1 Hs_OPN1SW_2 Hs_OPN1SW_3 P76 196463 mannose-6-phosphate protein p76 Hs_LOC196463_1 Hs_LOC196463_2 Hs_LOC196463_3 PCDH18 54510 protocadherin 18 Hs_PCDH18_1 Hs_PCDH18_2 Hs_PCDH18_3 PHF2 5253 PHD FINGER PROTEIN 2 Hs_PHF2_3 Hs_PHF2_4 Hs_PHF2_5 PIK3R5 23533 phosphoinositide-3-kinase, regulatory subunit 5 Hs_PIK3R5_2 Hs_PIK3R5_3 Hs_PIK3R5_4 PIK3R6 146850 CHROMOSOME 17 OPEN READING FRAME 38 Hs_C17orf38_3 Hs_C17orf38_4 Hs_C17orf38_5 PIN1 5300 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 Hs_PIN1_5 Hs_PIN1_6 Hs_PIN1_3 PKHD1 5314 polycystic kidney and hepatic disease 1 (autosomal recessive) Hs_PKHD1_1 Hs_PKHD1_3 Hs_PKHD1_5 PKN1 5585 PROTEIN KINASE N1 Hs_PKN1_6 Hs_PKN1_3 Hs_PKN1_7 PLAU 5328 PLASMINOGEN ACTIVATOR, UROKINASE Hs_PLAU_2 Hs_PLAU_10 Hs_PLAU_11 PLD2 5338 phopholipase D2 Hs_PLD2_2 Hs_PLD2_3 Hs_PLD2_5 PLK3 1263 polo-like kinase 3 (Drosophila) Hs_PLK3_5 Hs_PLK3_6 Hs_PLK3_7 POLK 51426 POLYMERASE (DNA DIRECTED) KAPPA Hs_POLK_4 Hs_POLK_1 Hs_POLK_2 POLR2H 5437 POLYMERASE (RNA) II (DNA DIRECTED) POLYPEPTIDE H Hs_POLR2H_2 Hs_POLR2H_3 Hs_POLR2H_4 POLR2L 5441 polymerase (RNA) II (DNA directed) polypeptide L, 7.6 kDa Hs_POLR2L_1 Hs_POLR2L_2 Hs_POLR2L_3 PPARA 5465 PEROXISOME PROLIFERATIVE ACTIVATED RECEPTOR, ALPHA Hs_PPARA_8 Hs_PPARA_7 Hs_PPARA_6 PPP1R14D 54866 protein phosphatase 1, regulatory (inhibitor) subunit 14D Hs_PP1R14D_1 Hs_PP1R14D_2 Hs_PP1R14D_5 PRDX5 25824 PEROXIREDOXIN 5 Hs_PRDX5_1 Hs_PRDX5_3 Hs_PRDX5_4 PRPF8 10594 PRP8 pre-mRNA processing factor 8 homolog (S. cerevisine) Hs_PRPS1_1 Hs_PRPS1_3 Hs_PRPS1_4 PRSS27 83886 protease, serine 27 Hs_MPN_1 Hs_MPN_2 Hs_PRSS27_1 PRX 57716 PERIAXIN Hs_PRX_3 Hs_PRX_6 Hs_PRX_7 PSENEN 55851 PRESENILIN ENHANCER 2 HOMOLOG (C. ELEGANS) Hs_PEN2_1 Hs_PEN2_6 Hs_PSENEN_1 PSMA1 5682 proteasome (prosome, macropain) subunit, alpha type, 1 Hs_PSMA1_1 Hs_PSMA1_12 Hs_PSMA1_3 PSMD2 5788 proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 Hs_PSMD2_5 Hs_PSMD2_6 Hs_PSMD2_2 PTPLA 9200 PROTEIN TYROSINE PHOSPHATASE-LIKE (PROLINE INSTEAD OF CATALYTIC Hs_PTPLA_8 Hs_PTPLA_3 Hs_PTPLA_1 ARGININE), MEMBER A PTPRN 5798 protein tyrosine phosphatase, receptor type, N Hs_PTPRN_3 Hs_PTPRN_4 Hs_PTPRN_5 RAB4A 5867 RAB4A, MEMBER RAS ONCOGENE FAMILY Hs_RAB4A_5 Hs_RAB4A_11 Hs_RAB4A_10 RAB6B 51560 RAB6B, member RAS oncogene family Hs_RAB6B_2 Hs_RAB6B_3 Hs_RAB6B_4 RACGAP1 29127 RAC GTPASE ACTIVATING PROTEIN 1 Hs_RACGAP1_1 Hs_RACGAP1_5 Hs_RACGAP1_3 RAX 30062 retina and anterior neural fold homeobox Hs_RAX_2 Hs_RAX_3 Hs_RAX_5 RBM42 79171 RNA binding motif protein 42 Hs_MGC10433_1 Hs_MGC10433_2 Hs_MGC10433_4 RETN 56729 RESISTIN Hs_RETN_3 Hs_RETN_2 Hs_RETN_5 RFFL 117584 RING FINGER AND FYVE-LIKE DOMAIN CONTAINING 1 Hs_RFFL_4 Hs_RFFL_1 Hs_RFFL_3 RNF150 57484 ring finger protein 150 Hs_RNF150_3 Hs_RNF150_5 Hs_RNF150_6 RPL35 11224 ribosomal protein L35 Hs_RPL35_5 Hs_RPL35_6 Hs_RPL35_3 RPLP2 6181 ribosomal protein, large, P2 Hs_RPLP2_1 Hs_RPLP2_2 Hs_RPLP2_3 RPS10 6204 ribosomal protein S10 Hs_RPS10_2 Hs_RPS10_5 Hs_RPS10_7 RPS14 6208 ribosomal protein S14 Hs_RPS14_4 Hs_RPS14_6 Hs_RPS14_8 RPS16 6217 RIBOSOMAL protein S16 Hs_RPS16_5 Hs_RPS16_8 Hs_RPS16_7 RPS27A 6233 ribosomal protein S27a Hs_RPS27A_2 Hs_RPS27A_3 Hs_RPS27A_7 RPS5 6193 ribosomal protein S5 Hs_RPS5_2 Hs_RPS5_5 Hs_RPS5_6 RPS6KA6 27330 ribosomal protein S6 kinase, 90 kDa, polypeptide 6 Hs_RPS6KA6_10 Hs_RPS6KA6_3 Hs_RPS6KA6_6 RUNX1 861 RUNT-RELATED TRANSCRIPTION FACTOR 1 (ACUTE MYELOID LEUKEMIA 1; AML1 Hs_RUNX1_5 Hs_RUNX1_4 Hs_RUNX1_6 SAFB 6294 scaffold attachment factor B Hs_SAFB_1 Hs_SAFB_3 Hs_SAFB_4 SCAF1 58506 SERINE ARGININE-RICH PRE-MRNA SPLICING FACTOR SR-A1 Hs_SR-A1_2 Hs_SR-A1_3 Hs_SR-A1_4 SCAMP4 113178 SECRETORY CARRIER MEMBRANE PROTEIN 4 Hs_SCAMP4_7 Hs_SCAMP4_3 Hs_SCAMP4_4 SCARB1 949 scavenger receptor class B, member 1 Hs_SCARB1_6 Hs_SCARB1_7 Hs_SCARB1_8 SDC1 6382 SYNDECAN 1 Hs_SDC1_3 Hs_SDC1_1 Hs_SDC1_6 SELPLG 6404 selectin P ligand Hs_SELPLG_2 Hs_SELPLG_3 Hs_SELPLG_4 SERPINA6 866 SERPIN PEPTIDASE INHIBITOR, CLADE A (ALPHA-1 ANTIPROTEINASE, Hs_SERPINA6_4 Hs_SERPINA6_3 Hs_SERPINA6_1 ANTITRYPSIN), MEMBER 6 SERPINB2 5055 serpin peptidase inhibitor, clade B (ovalbumin), member 2 Hs_SERPINB2_2 Hs_SERPINB2_5 Hs_SERPINB2_6 SERPINE2 5270 SERPIN PEPTIDASE INHIBITOR, CLADE E (NEXIN, PLASMINOGEN ACTIVATOR Hs_SERPINE2_6 Hs_SERPINE2_1 Hs_SERPINE2_7 SEZ6L2 26470 seizure related 6 homolog (mouse)-like 2 Hs_SEZ6L2_10 Hs_SEZ6L2_7 Hs_SEZ6L2_8 SF3A1 10291 splicing factor 3a, subunit 1.120 kDa Hs_SF3A1_1 Hs_SF3A1_2 Hs_SF3A1_3 SF3B1 23451 splicing factor 3b, subunit 1.155 kDa Hs_SF3B1_4 Hs_SF3B1_5 Hs_SF3B1_6 SF3B14 51639 splicing factor 3B, 14 kDa subunit Hs_SF3B14_2 Hs_SF3B14_5 Hs_SF3B14_6 SFTPB 6439 surfactant protein B Hs_SFTPB_15 Hs_SFTPB_16 Hs_SFTPB_17 SIGMAR1 10200 sigma non-opiod intracellular receptor 1 Hs_OPRS1_1 Hs_OPRS1_3 Hs_OPRS1_4 SLC12A4 6560 SOLUTE CARRIER FAMILY 12 (POTASSIUM/CHLORIDE TRANSPORTERS), MEMBER 4 Hs_SLC12A4_4 Hs_SLC12A4_5 Hs_SLC12A4_6 SLC22A6 9356 solute carrier family 22 (organic anion transporter), member 6 Hs_SLC22A6_3 Hs_SLC22A6_6 Hs_SLC22A6_7 SLC25A19 60385 solute carrier family 25 (mitochondrial thiamine pyrophosphate Hs_SLC25A19_1 Hs_SLC25A19_3 Hs_SLC25A19_5 carrier), member 19 SLC4A8 9498 solute carrier family 4, sodium bicarbonate cotransporter, member 8 Hs_SLC4A8_1 Hs_SLC4A8_2 Hs_SLC4A8_3 SLC7A1 6541 solute carrier family 7 (cationic amino acid transporter, y+ Hs_SLC7A1_1 Hs_SLC7A1_2 Hs_SLC7A1_3 system), member1 SMU1 55234 SMU-1 SUPPRESSOR OF MEC-8 AND UNC-52 HOMOLOG (C. ELEGANS) Hs_SMU1_7 Hs_LOC728623_1 Hs_LOC728623_2 SNRP70 6625 small nuclear ribonucleoprotein 70 kDa polypeptide (RNP antigen) Hs_SNRP70_2 Hs_SNRP70_3 Hs_SNRP70_4 SNRPF 6636 small nuclear ribonucleoprotein polypeptide F Hs_SNRPF_5 Hs_SNRPF_7 Hs_SNRPF_8 SNX6 58533 SORTING NEXIN 6 Hs_SNX6_10 Hs_SNX6_11 Hs_SNX6_4 SNX9 51429 sorting nexin 9 Hs_SXN9_1 Hs_SXN9_2 Hs_SXN9_3 SON 6651 SON DNA binding protein Hs_SON_2 Hs_SON_4 Hs_SON_5 SRRM2 23524 SERINE/ARGININE REPETITIVE MATRIX 2 Hs_SRRM2_4 Hs_SRRM2_7 Hs_SRRM2_5 STAB1 23166 stabilin 1 Hs_STAB1_1 Hs_STAB1_2 Hs_STAB1_3 SULF2 55959 sulfatase 2 Hs_SULF2_10 Hs_SULF2_5 Hs_SULF2_6 SUPT6H 6830 suppressor of Ty 6 homolog (S. cerevisiae) Hs_SUPT6H_5 Hs_SUPT6H_6 Hs_SUPT6H_7 TBL3 10607 TRANSDUCIN (BETA)-LIKE 3 Hs_TBL3_4 Hs_TBL3_3 Hs_TBL3_5 TCF3 6929 transcription factor 3 (E2A immunoglobulin enhancer binding factors Hs_TCF3_1 Hs_TCF3_5 NA E12/E47) TFE3 7030 transcription factor binding to IGHM enhancer 3 Hs_TFE3_1 Hs_TFE3_2 Hs_TFE3_3 TMEN50B 757 transmembrane protein 50B Hs_C21orf4_3 Hs_C21orf4_5 Hs_C21orf4_7 TNFRSF18 8784 tumor necrosis factor receptor superfamily, member 18 Hs_TNFRSF18_2 Hs_TNFRSF18_4 Hs_TNFRSF18_5 TNK2 10188 tyrosine kinase, non-receptor, 2 Hs_TNK2_4 Hs_TNK2_5 Hs_TNK2_6 TRERF1 55809 transcriptional regulating factor 1 Hs_TRERF1_3 Hs_TRERF1_6 Hs_TRERF1_7 TRIM14 9830 tripartite motif-containing 14 Hs_TRIM14_1 Hs_TRIM14_5 Hs_TRIM14_6 TRIM21 6737 tripartite motif-containing 21 Hs_TRIM21_11 Hs_TRIM21_6 Hs_TRIM21_7 TRIM60 166655 tripartite motif-containing 60 Hs_TRIM60_3 Hs_TRIM60_6 Hs_TRIM60_7 TSSK6 83983 testis-specific serine kinase 6 Hs_SSTK_2 Hs_SSTK_3 Hs_SSTK_4 TUBB4 10382 TUBULIN, BETA 4 Hs_TUBB4_2 Hs_TUBB4_3 Hs_TUBB4_6 TXNL4A 10907 thioredoxin-like 4A Hs_TXNL4A_1 Hs_TXNL4A_3 Hs_TXNL4A_5 UBAC2 337867 UBA domain containing 2 Hs_PHGDHL1_5 Hs_PHGDHL1_6 NA UBE2N 7334 UBIQUITIN-CONJUGATING ENZYME E2N (UBC13 HOMOLOG, YEAST) Hs_UBE2N-5 Hs_UBE2N-6 Hs_UBE2N-7 VNNZ 8875 VANIN 2 Hs_VNN2_1 Hs_VNN2_4 Hs_VNN2_2 WNT3A 89780 WINGLESS-TYPE MMTV INTEGRATION SITE FAMILY, MEMBER 3A Hs_WNT3A_4 Hs_WNT3A_2 Hs_WNT3A_1 WNT9A 7483 wingless-type MMTV integration site family, member 9A Hs_WNT9A_1 Hs_WNT9A_2 Hs_WNT9A_3 XAB2 56949 XPA binding protein 2 Hs_XAB2_5 Hs_XAB2_6 Hs_XAB2_4 XPNPEP1 7511 X-prolyl aminopeptidase (aminopeptidase P) 1, soluble Hs_XPNPEP1_1 Hs_XPNPEP1_2 Hs_XPNPEP1_3 XPO1 7514 exportin 1 (CRM1 homolog, yeast) Hs_XPO1_1 Hs_XPO1_2 Hs_XPO1_5 XRCC6 2547 X-ray repair complementing defective repair in Chinese hamster Hs_XRCC6_2 Hs_XRCC6_3 Hs_XRCC6_4 cells 6 (Ku autoantigen, 70 kDa) Gene Locus siRNA1 SEQ ID Symbol ID siRNA4ID siRNA1 Target siRNA2 Target siRNA3 Target siRNA4 Target WST NOS: AAMP 14 Hs_AAMP_5 GAGGAAGAGATACTAGTTAAA CTGGATGTGGAAAGTCCCGAA CTGGACTTTGCCCTCAGCAAA CCGCATGGAGTCCGAATCGGA 1.71 25-28 ACTN1 87 Hs_ACTN1_4 AACACCATGCATGCCATGCAA CCGGCCCGAGCTGATTGACTA AAGGATGATCCACTCACAAAT AACGATTACATGCAGCCAGAA 1.74 29-32 AHCYL1 10768 Hs_AHCYL1_1 CCCACTTGGATTTATAGTATA AAACAGTTGTATCGTATGCAA CTGATAGAACTCTATAATGCA CAGGGTGGTAAAGCTAAATGA 1.36 33-36 AIG1 51390 Hs_AIG1_3 CACGACGGTTCTGCCCTTTAT AAAGCCTAAATTGGAATGAGA ATGCAAATGCTGACTAATAAA GAGAAATATGTTAAAGTCAAA 1.85 37-40 AKR1C4 1109 Hs_AKR1C4_5 ATGGACCATCCTGATTATCCA GAGGGTGTTGCACGACATCTA CTGGGAACCCAACGACATAAA CAGGTGAGACGCCACTACCAA 1.63 41-44 AKTIP 64400 Hs_FTS_4 AAGGTGAAGAGAAGACATTAA CTGCACTGTCTTACTGATTTA TCAGCACTACTTAATAGTTTA TTGCATTCATTTAAACTAATA 1.62 45-48 ALDH7A1 501 Hs_ALDH7A1_3 AAGGTCTACTTGTACTATCAA AAGGATGATTGGAGGACCTAT TCCGATTCTCTATGTCTTTAA CGGGAGAAGATCCAAGTACTA 1.77 49-52 ALX4 60529 Hs_ALX4_5 CAGCAGCTACCTGAGTGTCAA CCGGACCACCTTCACCAGCTA CAGGTTCCCTGCTACGCTAAA CCCGTCCTGGCTCGGCAACAA 1.62 53-56 AP2M1 1173 Hs_AP2M1_6 TGCCATCGTGTGGAAGATCAA ACGTGTGACTTCGTCCAGTTA TGGAGGCTTATTCATCTATAA TTGGAGGCTTATTCATCTATA 1.61 57-60 APBB1IP 54518 Hs_APBB1IP_6 CAGAATATCTGCCCAAATGTA CACTGGTATCAGCCAATATGA AACCAATTAACCCAGTAGAGTT CCAGAGCTGAATTTAACTACA 1.82 61-64 ARD1A 8260 Hs_ARD1A_1 AACTTTCAGATCAGTGAAGTG CACAGAGAGCACAGATGTCAA CCGGGCCGCCCTGCACCTCTA ATCAGTGAAGTGGAGCCCAAA 1.81 65-68 ARTN 9048 Hs_ARTN_1 ACCCTGCGGATCCCAGCCTAA CCGGAAAGGTGCCTAGAAGAA CAGGCCCTGTAGGGACAGCAT CTGCAAAGCACCTAACACATA 1.57 69-72 ASAH3L 340485 Hs_ASAH3L_4 CAACAAGAAATCATCAGTCAA TTGGGTCAGATGCTTGATGAA CACGATCAGCAATGTCTTATT CAGAAGGTATCTACCAAAGAT 1.67 73-76 ATCAY 85300 Hs_ATCAY_5 CTCGCCTTTGTTTGCCAGTAA TCCCAACACGCTAAATTTCAA ACGAGTTTCCCTCTAATCCTA ATGATCCGGCCTTACATGAAA 1.82 77-80 ATP1A2 477 Hs_ATP1A2_5 CCGATTAATTGGAGATTACTA AACAATCAGATTAGACACTAT ACCCATAGCAATGGAGATTGA CAAGGAGATCCCGCTCGACAA 1.65 81-84 ATP6AP1 537 Hs_ATP6AP1_8 CTGGTGATGTTGTGCTAACAA TCCGAAGATGTCCCATACACA CAGCAATGGCTCCGTCGCCTA AAACTTCTCTGTGGCGTACAA 1.62 85-88 ATP6AP2 10159 Hs_ATP6AP2_4 GGGAACGAGTTTAGTATATTA ATGTGCTTATATAATCGCTTA AACATGGATCCTGGATATGAT TCCCTATAACCTTGCATATAA 1.84 89-92 ATP6V0C 527 Hs_ATP6V0C_5 TGCGCGGAGCTGTGTCCAATA GCGGATGATTTAGAATTGTCA CACAAAGTAGACCCTCTCCGA CCCACCAGCCACAGAATATTA 1.83 93-96 ATP6V0D1 9114 Hs_ATP6V0D1_4 CACTTTCATGTTCCTCCCTAA CCGCGCCTTCATCATCACCAT AAGGCTCTCAATTGCACTCTT CAACTACATCCCTATCTTCTA 1.66  97-100 ATP6V1A 523 Hs_ATP6V1A_4 ATGGAGGTGATGGTAAGGTA GAGCTTGAATTTGAAGGTGTA ACCCAAATTGTGATAGCATAA TAAGGTAGAGTCAATTATGAA 1.9 101-104 ATP6V1B2 526 Hs_ATP6V1B2_6 CAGGCTGGTTTGGTAAAGAAA ACCATGTTACCCTGTAATTAA GAGGATATGCTTGGTCGGGTA CAGGGTAATCTTTGTGGCACA 1.55 105-108 AZIN1 51582 Hs_AZIN1_1 CGGATTTGCTTGTTCCAGTAA CAGGTTAAGCTTGTCTGGTCA CCGGATTTGCTTGTTCCAGTA ACACTCGCAGTTAATATCATA 1.7 109-112 B2N 567 Hs_B2M_6 AAGTGGGATCGAGACATGTAA CTGGGTTTCATCCATCCGACA AACATCTTGGTCAGATTTGAA AAGATAGTTAAGCGTGCATAA 1.34 113-116 B3GNT1 11041 Hs_B3GNT1_6 CAGCACAATAAGATCCTATAT CTGGGTCAACCTGCCGGAAGA ATGCGTGTTCACACCCACAAA ACGGTCCGTGGACCAGGTCAA 1.4 117-120 BAIAP3 8938 Hs_BAIAP3_6 TGGGATCATGACGACGATGTA GTCGACCTTGCTGGACATTAA CTCGCCTGACTCCATCCAGAA CCCGCTCATGAAGTACCTGGA 1.71 121-124 BARHL2 343472 Hs_BARHL2_4 CAGCAAGACCAAACTCGACAA TCGCCTTATTTCTATCACCCA CAGAGTGCAACCAGTAAGTGA TCCGACCACCAGCTCAATCAA 1.77 125-128 BNIP3L 665 Hs_BNIP3L_1 TAGCATTTGATGTCTAAATAA AAACGAGATCAGGTTAGCAAA CTGGGTGGAGCTACCCATGAA AAGAAAAGTGCGGACTGGGTA 1.63 129-132 BRUNOL6 60677 Hs_BRUNOL6_9 CCCACCTGTAAAGTAGATTCA TACCTTCTGTCTCTTAGTCTA AAGCTGATCAATGGTGGTGAA CTGAAGGCCTCTGATCTGATA 1.87 133-136 BZRAP1 9256 Hs_BZRAP1_5 CACAGTGAGTATGTAACTTGA CCGCCGTCTGGTGGTCCTCAA CAGAGCTAAATGGCTCCTTAA CTGGAAGACATGCCTGGATTA 1.8 137-140 C14orf172 115708 Hs_C14orf172_2 CCAAGTGTGAGTGATGAGCAA CACGGTGGAGTTCCACCAGCA CCGCAGCGGCACGCCCATGAA CACCATGAGCTTCGTGGCATA 1.77 141-144 C19orf47 126526 Hs_FLJ36888_3 TCGAGCCTGTTGAGACTGTTA TGCCGTGATGTTTGTGGATAA CACCGTCAGGACATGTGCAAA CTCGGTCACTGTGTCCAACAA 1.6 145-148 C21orf7 56911 Hs_C21orf7_4 CTGAGAATTGTTGTAAAGTAA AAGGTGTGGAATAACCCTTAA TTCAAATATGCTCAAATTTAA AAGGAGCTCATTGCCAAGTTA 1.63 149-152 C3orf31 132001 Hs_C3orf31_4 AGCCCTCGATAGAAATCTGAA ACCCTGTCGCATGGCATTCAA CACGTCCATCCAGAATAACTA CTCGTGGGTGACCTTCCGCAA 1.7 153-156 C4orf29 00167 Hs_FLJ21106_4 AAGCGCTTCAATCAAACACTT TGGGTGTGAGCAAGTTAGATA GCCCGTCCTATGATTAAAGAA TACCACCTACTTAGTAAAGAA 1.72 157-160 CARD9 64170 Hs_CARD9_5 CCGCGTCTTCTCCATGATCAT CAGCGACAACACCGACACTGA CTGGTCATCCGCAAACGGAAA ACGTAAGGACTCCAAGATGTA 1.73 161-164 CASP8AP2 9994 Hs_CASP8AP2_1 CAGTCTGATCTCAATAAGGAA CAGCTGATGTGCGGAAGTCAA CACATACGTAGATCTAACGAA AAGACTGATCACAGAGCTAAA 1.78 165-168 CCNB3 85417 NA AAGGCTGTGTATTACAAGTAT AGGGCTAAGCATGCATGTTAA AAGCTGGTGGATCTCTACCTA NA 1.5 169-171 CD48 962 Hs_CD48_4 CAGAAGCATGCTGCTGAATTA CACCCTTATGCCACATAATTA CTGCAAGTGCTTGACCCTGTA CTGGCGAGTCTGTAAACTACA 1.46 172-175 CD58 965 NA TAGCAGTAATTACAACATGTA AAGCATTGAAGTCCAATGCAT CAGTGTACTCTTAGCAATCCA NA 1.88 176-178 CD6 923 Hs_CD6_5 CCGGCAGGATGTACTACTCAT CTGGCGGTTCAACAACTCCAA CAGCACTACTGCGGCCACAAA AAGGAAACGTTATACCTTGTA 1.65 179-182 CD63 967 Hs_CD63_9 GCGGTGGAAGGAGGAATGAAA ATGGTCTGAGTTTGTCTTAGA ATGTGTGAAGTTCTTGCTCTA TAGAGATAAGGTGATGTCAGA 1.69 183-186 CD81 975 Hs_CD81_9 CACCTCAGTGCTCAAGAACAA CTGACTCCGTCATTTAATAAA CGCTGTGATCATGATCTTCGA CTGCACCAAGTGCATCAAGTA 1.55 187-190 CDC23 8697 Hs_CDC23_8 TACGAGAAACTCAATCAACTA CTGCAATAGCAAGAAAGCCTA ACAGCAGGAGGTAATATGCTA AAGGACGATGAAACAGTTGAT 1.7 191-194 CDK4 1019 Hs_CDK4_13 TGCCTATGGGACAGTGTACAA AAGGTAACCCTGGTGTTTGAG AAGCCTCTCTTCTGTGGAAAC AAGGATCTGATGCGCCAGTTT 1.79 195-198 CDKN1B 1027 Hs_CDKN1B_7 ACCGACGATTCTTCTACTCAA CTGTAAGTAACTTCACATTAA CAACAACACAATAACACTAAA CCAATTATTGTTACACATTAA 1.86 199-202 CEL 1056 Hs_CEL_6 AGCCCTGACGCTGGCCTATAA CCCGTTATGATCTGGATCTAT TGGGTTCGTGGAAGGCGTCAA CATCGTGGTCACCTTCAACTA 1.58 203-206 CHST5 23583 Hs_CHST5_8 CAGGGAGTAAGTTACTGCTAA CCACGCGTTGCCCTTCACTAA CACGGGTAAAGTGATCCGTCA CAGCAAGCAGGACGTATGCAA 1.47 207-210 CIB3 117286 Hs_CIB3_7 CTGGAGCAGACGGTGACCAAA TGGCAGCATGCCCGAGCTGAA CCGCGACCTCAAGGCTTACTA CCAGAGGATTGCCCAGGTATT 1.57 211-214 CLIC4 25932 Hs_CLIC4_4 TAGCAGTACAATGATTAGTAA CAGGGAAGTTAGTCAAATGAA CACGAACATGCAGTTATTGAA CTGGATATGTACTAACGAATA 1.77 215-218 CLK1 1195 HS_CLK1_6 CACGATAGTAAGGAGCATTTA CAGGACGATGAGACACTCAAA AACGTGATGAACGCACCTTAA GAGAAAGATTATCATAGTCGA 1.89 219-222 CNNM1 26507 Hs_CNNM1_7 CTGGGTTATCTGCATCTCAAA CTCACTGAACTCATTGATCGA TGGCGCGTGATTGACATTACA CACGCTGGAGGATATCATAGA 1.72 223-226 COPA 1314 NA CACACGGGTGAAGGGCAACAA AGAGATGTTAACCAAATTCGA TCCGATGATCAGACCATCCGA NA 1.73 227-229 COPB1 1315 NA AACTCCAGATGGGAGACTTTT CACGTTAATTAACGTGCCAAT AAGATTTACCGAGGAGCATTA NA 1.69 230-232 COPB2 9276 Hs_COPB2_3 ACGATTCTTCAGAGTATGCAA CAGGTTTCAAGGGTAGTGAAA CAGTACGTATTTGGCATTCAA AGGCGTGAATTGCATTGATTA 1.56 233-236 COPG 22820 Hs_COPG_7 CCGAGCCACCTTCTACCTAAA CACCGACTCCACTATGTTGAA AGGCCCGTGTATTTAATGAAA TCCGTCGGATGTGCTACTTGA 1.6 237-240 CRAMP1L 57585 Hs_CRAMP1L_8 CCCGACAACCTTGCCACCCAA CTGCATAATGATCCCATTTCA AGGGCGGAACCTGCGGATCAA CTGGTGTGCATGATGAACGAA 1.64 241-244 CRYAA 1400 Hs_CRYAA_4 CCGGGACAAGTTCGTCATCTT CCCGGAGGACCTCACCGTGAA CAGCCCGCGGCAATCAATAAA ACCGCACCTCACACTCCTTTA 1.8 245-248 CTA-216E10.6 19640 Hs_FLJ23584_3 GAGGTGCGAAACTGTCTTCAA CAGGGTGGAGGTGGGAATGAT TTCAGGAACTAGGGAATAGAA AAGGTGGAAGTAAGAAAGCTA 1.65 249-252 CUEDC2 79004 Hs_CUEDC2_3 CCCGACGGAGCAGAAGAGAGA CGGCCCGAAATGCTCAAAGAA TTGCTCCATAGTGTTAACCTA ATGCTGGTAGAGGGAAAGGAA 1.72 253-256 CXCR6 10663 Hs_CXCR6_4 TCGTTTCATTGTAGTGGTTAA CAGGTCATGTGCAAGAGCCTA CTBCTATTCAGTCATAATCAA CACCAGCATGTTCCAGTTATA 1.83 257-260 CYC1 1537 Hs_CYC1_4 CCCATCATGGGAATAAATTAA CAGCATGGACTTCGTGGCCTA TACCATGTCCCAGATAGCCAA GCGGGAAGGTCTCTACTTCAA 1.8 261-264 CYP17A1 1586 Hs_CYP17A1_5 CAGGCTGAGGGTAGCACCTAA CCGGAGTGACTCTATCACCAA TGAGTTGAATGTCATACAGAA CAGACACGGCCATATGCATAA 1.85 265-268 CYP2U1 113612 Hs_CYP2U1_5 CAAGGGTATACCATTCCTAAA CCGGAGGATTTCTACCCTAAT CAGCGCTTTGATTACACTAAT CTGGGACTGATACCACAACTA 1.44 269-272 DBT 1629 Hs_DBT_6 TAGCCATATACAGACAGTATA ATGACTGTTCCTATACTAGTA CAGGGTTTGATTGTCCCTAAT CTGGTTAAGCTCCGAGAAGAA 1.7 273-276 DCLK2 166614 Hs_DCAMKL2_6 CCGCACTATCTACACCATCGA CTGAGCTTGACCGTTGCATAA ACCATTTCGTAAAGTCGATTA CTCGGTGTACCGCGGGACAAA 1.57 277-280 DGKH 160851 Hs_DGKH_6 CCGGATCTAGATTCCGTAGAT CTCCTAGTGCTTAGTGGTCAA CAGGTGGAGTATAATGACATA TGGGAGTTCGATTATCAACAA 1.47 281-284 DGUOK 1716 Hs_DGUOK_5 CTGTAGCAACATGGCAGAATA CAGCTGCATGGCCAACACGAA ACCCTTCAGTTCCATGGCCAA CCGGATCACATTACATGGCTT 1.77 285-288 DHRS2 10202 Hs_DHRS2_5 CTCTCTGTAATTTGTGCTTTA TAGATTTGGCTGATCCAATTA CTGGAAGAACTTCAAGGAACA CAGGAAGGGCGTCCTGGCTAA 1.65 289-292 DLG2 1740 NA TACGCTCGATTTGAGGCCAAA CAGAGCCATGTTCGACTACGA NA NA 1.8 293-294 DMAP1 55929 Hs_DMAP1_3 ACAGACCTTAAGATACCAGTA CCCAAGGACACCATCATTGAT CAGGTTCAATAAGACTGTGCA CCGGCTGTTCCTGAGACTGCA 1.83 295-298 DMRT1 1761 Hs_DMRT1_6 CTGCATGATTTAAGTGCTTTA CACCTACTACAGCAGCTTCTA CCAGTACAGGATGCATTCTTA AAGAGAGAACAATGGCAGTAA 1.59 299-302 DTX3 196403 Hs_DTX3_7 TCAGATACAGTTCTCCCTTAA TGGGCGGATGCTGGTCTCTAA AAGGGTATCACAGATGACTGA TGGCGAGACTTCTGACATCTA 1.67 303-306 DUSP27 92235 Hs_DUSP27_4 AAGCTTTGGTGTTTCACTTAA CAGAAAGTCTATCCTATGGCA CTACCTGATGATCTTCCACAA TACATCCAGAAAGGCCATGAA 1.85 307-310 E2F1 1869 Hs_E2F1_5 CAGATGGTTATGGTGATCAAA CTCACTGAATCTGACCACCAA CAGATCTCCCTTAAGAGCAAA AACTCCTCGCAGATCGTCATC 1.88 311-314 EEF1A1 1915 Hs_EEF1A1_9 AAGTGAATCTTTGGAAACAAA CACCTGTAAGATTTACCAGTA CAAGTCTGTAATGAAGTGTTA AAGGAATATCATTTAAAGCTA 1.76 315-318 EIF3A 8661 Hs_EIF3S10_8 GAGGATCTAGATAATATTCAA CAGGATCGTACTGACAGATTA ATGGCTAAACAGGTTGAACAA CAGCGTCGCCTTGCAACACTA 1.69 319-322 EIF3C 8663 Hs_EIF3C_2 CCGCCGACGCATGATCAGCAA AACGAATGGATGAAGAATTA CTGACCTAGAGGACTATCTTA CCCGAGCAGTCTGCGGATGAA 1.62 323-326 EIF3G 8666 NA AAGAGGACCTGAACTGCCAGG CTCCCGCATCTACCTGGCTAA CAAGGAGGTCATCAACGGAAA NA 1.71 327-329 EIF4A3 9775 Hs_DDX48_6 CCGGAAGGGTGTGGCCATTAA CCCATAAACTCTATACTTCTA CCGCATCTTGGTGAAACGTGA ATGATTCGTCGCAGAAGCCTA 1.65 330-333 ENGASE 64772 Hs_FLJ21865_7 CAGGCAATTAATTAGGAGTAA CTGCGACGGCTTCTTCACTAA CACGGACGTCACAGTTGCTTT CGGCCGGGAAGGAGCATCAAA 1.6 334-337 EPB49 2039 Hs_EPB49_4 CCGCCCAGATTCCAACATCTA CAGAAGATCTATCCCTATGAA GTGGATATAATGATATCTATA CTGGCTGTTGTGGAGACAGAA 1.79 338-341 EPHB6 2051 Hs_EPHB6_10 CTGGAGCTTTGGGATACTCAT CGCCAATCTCTAGATCAACAA CTCCTGGATTACATCTACTTA CGGGAAGTCGATCCTGCTTAT 1.86 342-345 ERN2 10595 Hs_ERN2_2 CACCTGCACTCTTTACACATA AGGGATGATCCCGTCATCGAA CTGGTTCGGCGGGAAGTTCAA ACCAATGTACGTCACAGAAAT 1.61 346-349 FAU 2197 NA CCGCCGTTCAGTCGCCAATAT GGCCGCATGCTTGGAGGTAAA AAGTGAGAGGTCAGACTCCTA NA 1.6 350-352 FBXW10 10517 Hs_FBXW10_7 CAGGATCAATGACATATCACA AAGGCGAATTATACTCTCTTA CCCGTTGAATTCCGAGGCCAT GAGAACGAAGAATGAGTACAA 1.56 353-356 FCHO2 115548 Hs_FCHO2_4 AAACATGTAATATATAATTTA ATCGGATAGAAATTAAGCCTA TAGTGTAATATCAGGCCTAAA AAACCACTAATTGTTCCGTTA 1.81 357-360 FCRL6 343413 Hs_FCRL6_2 CTGTGGTGCATAGAACCTCAA CAGGGATGGAAGAATACACCA CTGATGGTTATTGCTGCTGCA TCCGATCCTGTATTCCTTCTA 1.81 361-364 FERMT3 83706 Hs_URP2_7 CTGGCTGCGCTTCAAGTACTA CTGCCGAATTGTACACGAGTA AAGTTCTGCATTAAACTCCTA CCCGTTTCCAGCGAAAGTTCA 1.74 365-368 FGF3 2248 Hs_FGF4_5 TTGTGTCATCACAACATTAAA CGGGCGGTACCTGGCCATGAA CCGCGTCTGGGTTCTCAGCTA CAGCGCCGAGAGACTGTGGTA 1.83 369-372 FLJ11235 54508 Hs_FLJ11235_4 CAGGATCAGCATAACCGCCAA CCGTAGCACAGTAGAAATGAA ACCTAGGACGTTAGCCCTTAA CTCATAGTGATTTGCCACAAA 1.8 373-376 FLJ20489 55652 Hs_FLJ20489_6 ACGCACGTGATGTACATGCAA CTGGACCTATGCTGCAGGCAA CAGCCTCTATGCCCACCGCTA CAGGACGAGTGTGGTCTCCCA 1.8 377-380 FLJ34077 484033 Hs_FLJ34077_4 CAGCCTGATGATGCAGTAGAA AAGGGAAACAAGAGCATAAAT TTGGAACTGGGTGTTGAAATA CAGAGTGGATTCATCCTGTAT 1.73 381-384 FNTB 2342 Hs_FNTB_3 CACGTCCATAGAACAGGCAAA ACCCACATATGCAGCAGTCAA CTCCGTAGCCTCGCTGACCAA TCCGCTCGCCGTAGCGCTTTA 1.67 385-388 G6PC 2538 Hs_G6PC_5 TGGGATCCAGTCAACACATTA TAGCAGAGCAATCACCACCAA CCAAGTCGAGCTGGTCTTCTA AGGGATTGAGGAGGACTACTA 1.57 389-392 GCLC 2729 Hs_GCLC_11 CCGGATCATATTTACATGGAT CATCGACTTGACGATAGATAA CACCCTCGCTTCAGTACCTTA ATCAGGCTCTTTGCACAATAA 1.78 393-396 GNMT 27232 Hs_GNMT_5 AGGGAAGAACATCTACTATAA AACATCAGTGCTGATAGTGAA CAGACGGAAGGGTAAACAATA CAGCCGCACCGCCGAGTACAA 1.56 397-400 GNRH2 2797 Hs_GNRH2_5 CCCGCCATCCTCCAATAAAGT CTGAAGGAGCCATCTCATCCA TGGCTGGTACCCTGGAGGAAA CAGACTGCCCATGGCCTCCCA 1.83 401-404 GPR146 115330 Hs_GPR146_5 CAGGGTTCTGAGAACATTTCA CTGGTGTTAAATGGAGCTATT CAGCATTCAGTTTGTCAATGA CAGTATGAACCTGTCCTAAAT 1.65 405-408 GRID2 2895 Hs_GRID2_5 AACGATGTGGACGTACAGGAA CACGATTACAAATGGGATCAA AAGCAATGGATCGGAGAACAA CACCGGATCACAAATACGGAA 1.87 409-412 GRIN2C 2905 Hs_GRIN2C_5 CTGGACGAGATCAGCAGGGTA CCCAGCTTTCACTATCGGCAA CACCCACATGGTCAAGTTCAA GTCGATGTGCTTGCCGATCTA 1.75 413-416 GRP 2922 Hs_GRP_7 ATCAGTTCTACGGATCATCAA CCAGCTGAACCAGCAATGATA CAGAGGATAGCAGCAACTTCA CGGAGGGACCGTGCTGACCAA 1.75 417-420 GSK3A 2931 Hs_GSK3A_7 AAGCTTTAACTGAGACTCCGA AAGAAAGACGAGCTTTACCTA ACCACAGTCGTAGCCACTCTA CAAAGGTGTTCAAATCTCGAA 1.78 421-424 HARBI1 9776 Hs_KIAA8652_5 CTGGGCGTATGATTGACTTAA CAGGAAGTCCTGGGTGCTAAA CAGGTATTGTTACTTGAATAA AAGGCGGGAGTGACCGCTTAA 1.51 425-428 HIBCH 26275 Hs_HIBCH_4 CACGGGAGTCATAACACTAAA CAACTTAGGTATACAATATAA TAGCCTTGAAATCTCCTTCAA TCGAGGTTTAATGCATTCAAA 1.36 429-432 HIST1H2BN 8341 Hs_HIST1H2BN_9 CTCCTTCGTCAATGACATCTT CAAGGCCATGGGCATCATGAA CACCAAGTACACCAGTTCCAA CCGCCTGGCGCATTACAACAA 1.76 433-436 HPGD 3248 Hs_HPGD_4 CTGGCAGTGACTAATCAGTAA CAAGAGCTTCTTAGAGTAGTA CAGCCGGTTTATTGTGCTTCA CAAGACTATGATACAACTCCA 1.73 437-440 HSF4 3299 Hs_HSF4_4 CCGACTATCCCTGCACATAAA CAGAGCCGTTTCGCCAAGGAA CCGGGTCATTGGCAAGCTGAT AAGGGCGAGAATGGACCCTGA 1.82 441-444 HSPD1 3329 Hs_HSPD1_1 AAGGCTTCGAGAAGATTAGCA CACCACCAGATGAGAAGTTAA CAGGGTTTGGTGACAATAGAA CGGGCTTATGCCAAAGATGTA 1.63 445-448 ICAM2 3384 Hs_ICAM2_3 CGGGAAGCAGGAGTCAATGAA TCCCATGACACGGTCCTCCAA CACGGTGGTCACTGGAACTCA AACATCTTTCACAAACACTCA 1.81 449-452 ICEBERG 59082 Hs_ICEBERG_5 CAGTGGGTGCAGGCACAATAA AGCCAGGAAGACATGAACAAA CCAAGTCTTGCTGCAAATTTA AACCTGATTAATTTCATCAAT 1.51 453-456 IL17RA 23765 Hs_IL17RA_2 CAGCGGTCTGGTTATCGTCTA CGGCACCTACGTAGTCTGCTA CAGCTGGATTCACCCTCGAAA TCCCGACTGGTTCGAATGTGA 1.77 457-460 IL1A 3552 Hs_IL1A_4 AAGGCAAAGCACGAAATGTTA CACGCCTACTTAAGACAATTA TCGAGTTGAATGAACATAGAA CTGAGGTGATTTATGCCTTAA 1.59 461-464 IQCF2 389123 Hs_IQCF2_4 CAGGGCTAATGAACCATCTAA AAGCATTGAATGGAAGACATT TCGAGGGTGCTGGAGAAGAAA CAGCTCTGATCGCCTACGCAA 1.76 465-468 IRF2 3660 Hs_IRF2_4 CACCTTATCTTAAAGCACTTA CGGTCCTGACTTCAACTATAA ACGGTGAACATCATAGTTGTA CCCTATCAGAACGGCCTTCTA 1.68 469-472 ISG15 9636 NA CCGGAAATAAAGGCTGTTTGTA AAGATGCTGGCGGGCAACGAA CTCATCTTTGCCAGTACAGGA NA 1.69 473-475 ITLN1 55600 Hs_ITLN1_5 CTGCGGGATTTGTTCAGTTCA ACCCAGTAGCTAGAATGTTAA CCCGGTGATCCCTGTGGTCTA TGGAGTGGATATGGAACTCAT 1.79 476-479 JARID1D 8284 Hs_SMCY_4 CCCAGAGACGTTGGATCTCAA CAGGGTAGAAACGTTGAGAAT CTGACGATTGCTTAGCATTAA CGCGTCCAAAGGCTAAATGAA 1.81 480-483 JUN 3725 Hs_JUN_3 AAGAACGTGACAGATGAGCAG AAGAAGTGTCCGAGAACTAAA TTCGTTAACATTGACCAAGAA CGCGCGCGAGTCGACAAGTAA 1.46 484-487 KATNB1 10300 Hs_KATNB1_4 CTGCTGTAATTTATAAGGCAA CAGGGAGGAGAGGCTGCATAA CTGAACATCGTCAACCAGAAA CAGCCTGGATTTCCACCCGTA 1.46 488-491 KCNAB3 9196 Hs_KCNAB3_5 AGGGAACATCCTCAAGAGCAA CCGAGCGAGGTTTAAGCCGAA AACCCTAGGGAACATCCTCAA AACCTGTTTGACACCGCCGAA 1.62 492-495 KCNJ12 3768 Hs_KCNJ12_6 TTGGGTGAGACTGTTTACAAA TGCGAAGGATCTGGTAGAGAA CAGCTCCTACCTGGCCAATGA CTCGCACTTCCACAAGACCTA 1.64 496-499 KIAA0664 23277 Hs_KIAA0664_5 CTCGGCCAAGCACATCTTCAA AAGGGCCATATTCAAGGTGCA CAGCCCGACCTTCAAGAAGAA CGCCTTCGACATTCGCTTCAA 1.59 500-503 KIAA0947 23379 Hs_KIAA0947_3 CTGGCAGTTTATTGCTCTTAA TCGGTGTTGCCTAATCAAGTA CAGGTAGGATTTCTACACCTA ATGGATTAGTTCTCAAATCTA 1.82 504-507 KIAA1128 54462 Hs_KIAA1128_6 ACCGTATATTTATGAAGCATA GAGCATAATTATCTCAGGTAA AAGAGCCTAACAATACTCAAA TACGGTCAAGTATGCTAACAA 1.83 508-511 KIAA1267 284058 Hs_KIAA1267_1 CAGCCTAGATTTCCGAAATAA TCGCGTAGAGAAACTGCAATA CACCATATCCCTATGCATAAA GAGACGCAGGTCAGAATGGAA 1.7 512-515 KIF11 3832 Hs_FIF11_14 ACGGAGGAGATAGAACGTTTA GCCGATAAGATAGAAGATCAA CTCGGGAAGCTGGAAATATAA AACTGGATCGTAAGAAGGCAG 1.37 516-519 KIF23 9493 Hs_KIF23_3 CACGCACAACCCAAGCGCAAA AACGACATAACTTACGACAAA TAGGAATAGTATGGATATACA CCATAGCGTGTTCAACATTAA 1.82 520-523 KIF3A 11127 Hs_KIF3A_6 CAAGAACGCTTGGATATTGAA GCCGATCAATAAATCAGAGAA AAGACCTGATGTGGGAGTTA CTGGTTCAGAAAGACAGGCAA 1.46 524-527 KPNB1 3837 Hs_KPNB1_4 CAAGAACTCTTTGACATCTAA AAGGGCGGAGATCGAAGACTA CTGGAATCGTCCAGGGATTAA CTGGTACAACCCAGAGTAGAA 1.73 528-531 LAMC2 3918 Hs_LAMC2_3 CAGGCATATGGATGAGTTCAA CCCAATTGGTTTCTACAACGA CCGGACGGTGCTGTGGTGCAA TACTTTGAGTATCGAAGGTTA 1.64 532-535 LARP1 23367 Hs_LARP1_3 CACCTAATCCACAGAAAGTAA CAAGCGCCAGATTGAATACTA TCCATGACTCTTGACATCCTA CAGAGGAGGTCAGCAACCTAA 1.67 536-539 LHX3 8022 Hs_LHX3_5 CAGCTCTTTCCAAGACTTCAA CTGGCCTGTGTGTAAGTCAAA CCCACAGATGTCTGTTGCCAA CTCCATCAGATCCTTTGGGAA 1.64 540-543 LINGO1 84894 Hs_LRRN6A_6 AAGGACTTCCCTGATGTGCTA CCGCTGGCGGCTCAACTTCAA CTAGGCAAGAACCGCATCAAA CTGGCCCTACTTGGACACCAT 1.47 544-547 LOC162993 162993 Hs_LOC162993_4 CAGGTATTCCACATACCTTAA CAGCACTTGCTAAACATCTAA CAGGACTTAAATTACACATCA TCGGGCCTTAGTACCCATTTA 1.53 548-551 LOC399940 399940 Hs_LOC399940_8 TTGATCAAAGTTCCCTGATAT ATGGGACAAATAAGTTACATT CTCAGTGGATTCAGAGTTGAT TGCAGCCTGAAAGAACCAATA 1.71 552-555 LOC401431 401431 Hs_LOC401431_4 CAGGGAATTATTCACATGGCA ATGACTTTGATTTCTGCATAA CCCGAGGATGTGGAGCCGCAA AAGCCTCATCTGGGCCCACAA 1.56 556-559 LOC440733 440733 Hs_LOC440733_14 ATCATGATGGTTAGCCATTTA CAGCTGAAACTTTCTTGATCA AAAGAGCATTATCTAAGTAAT AACAACCTTTAGATATGCAAA 1.64 560-563 LPPR4 9890 Hs_LPPR4_9 CTGCTCGGGCCAAGTGGTTAA AAGCTAGATTGTCTACCATCA CCCATTCGGTTCTACATTATT CCGGAGTCTTAGCATGCCGTA 1.81 564-567 MAN2B1 4125 Hs_MAN2B1_5 CGCCAAGGAGCTGGTCGATTA TCGACCCACCTGGAAACTGAA GCGCCTTGATTATCAAGATAA TCGGCCGGCCCTCAAACGCTA 1.86 568-571 MAP2K3 5606 Hs_MAP2K3_8 ACGGATATCCTGCATGTCCAA CCGGGCCACCGTGAACTCACA ACCATTGGAGACAGAAACTTT TCGACTGTTTCTACACTGTCA 1.72 572-575 MATN3 4148 Hs_MATN3_5 CACCTTGAATGCCGACAAGAA CACCACTGTGAGTGTAGCCAA AAGGTCAGCTCGTATCTTCAA TATGGACAAATACATCGTTAA 1.77 576-579 MED6 10001 Hs_MED6_7 AAGGGTATTGGTGGCACTTCA TCCCACTAGCTGATTACTATA CACCCAAATTTGTGCAGCTAA AAGCCTGTTCCAGTGGATCAA 1.67 580-583 MKL1 57591 Hs_MKL1_7 TAGTGTCTTGGTGTAGTGTAA AGCAAGATTGCCATCACGAAA AAGGGCCTGGATGCAAGGTTA ATCACGTGTGATTGACATGTA 1.67 584-587 MRPS12 6183 Hs_MRPS12_8 TTCCATCAGGACCACTATTAA CACGTTTACCCGCAAGCCGAA CCCACTCAGAGCGAGGCTAAA ACCCTGGCGCTTGTGATGTAA 1.61 588-591 MYC 4609 Hs_MYC_1 GATCCCGGAGTTGGAAAACAA CTCGGTGCAGCCGTATTTCTA ATCCACGAAACTTTGCCCATA CCCAAGGTAGTTATCCTTAAA 1.69 592-595 MYEF2 50894 Hs_MYEF2_3 CAGAATAATGAATGGCATAAA ATCGATATGGATCGAGGATTT CTCGTAGGGCATTGCAGCGAA TCCTTTAATGTTGTAATTGAA 1.87 596-599 MYOD1 4654 Hs_MYOD1_5 TACAGGGAATTTGTACGTTTA CTGCACGTCGAGCAATCCAAA CACGTGGGCGCGCTCCTGAAA CTCCGACGGCATGATGGACTA 1.69 600-603 NAE1 8883 Hs_APPBP1_6 ATGGACTAGTTGGTTATATGA AAAGATGATTATGTCCACGAA TCGATCCTTAGCTGAAGAATA GTGGGTAATCATGTTGCCAAA 1.69 604-607 NDUFV3 4731 Hs_NDUFV3_6 ACACTGATTATCCAACATATA ATCCATATAATTAGAGAATTT CCCGCTGTGCATAATCGGTTT CTGAGCCGTTTGACAACACTA 1.44 608-611 NECAP2 55707 Hs_NECAP2_2 AAGGAGCTCAGTAAACTAGAA CAGGTACTTCGTGATCCGCAT CAACATCGCAAACATGAAGAA CTGCAGCTTGAGCTACAATCA 1.8 612-615 NEK8 284086 NA ACGGACAGTTGGGCACCAATA CCAGAAGCTGGTGATCATCAA TAGAGTTAGAAGGCAGACCTA NA 1.66 616-618 NEK9 91754 Hs_NEK9_2 CAGGTGTCATGTGGTGATGAT TGCCTTCGGATCAGATTATTA CAGAGCTCGTCAAGGAGTAA TACACTTGGGTGAACATGCAA 1.81 619-622 NSF 4905 Hs_NSF_9 AGGCAGACTTTCTACATGCAA GTGGGTCAATTCCTTAGTATA ATCCAACTTCCCGTTCATCAA TTGGCCCTCTTAAGAGAAGAA 1.64 623-626 NTHL1 4913 Hs_NTHL1_6 GAGCAAGGTGAAATACATCAA CAGGCTGAGGTGGACCAAGAA ACCGTCTGTGAAGTGGCTTTA GTGGACCAAGAAGGCAACCAA 1.85 627-630 NUP205 23165 Hs_NUP205_9 CAGCACTTCCTGGAATATTAA CAAGATGTGCATGATAAGATA GAGAGTCAACTGGCTCTAATA AGGGTGCATTAGAGCTGCTAA 1.72 631-634 NUP98 4928 Hs_NUP98_8 CTGGAGTTAGCACTAACATAA CAGTGTATTACTGCTATGAAA AACCCTATTGCCAAACCTATT CTCACTAAGGTTGGTTACTAT 1.79 635-638 NXF1 10482 Hs_NXF1_4 CAGAACAAGTAGAACAGCTAA AACGCGTTAATTTCCCTCAAA CCGAAGGATATCTATCATCAT CGCGAACGATTTCCCAAGTTA 1.66 639-642 ODZ4 26011 Hs_ODZ4_5 CCGGCCGGCCTTTAACCTCAA CCGCAGGGTGATATACAAGTA TCGGTTTATCCGGAAGAACAA CTGCGGGTTCACAACCGAAAT 1.81 643-646 OPN1SW 611 Hs_OPN1SW_4 CAAGAGTGCTTGCATCTACAA CGCCATGTACATGGTCAACAA GCGCTACATTGTCATCTGTAA TTGGCCTGTTTGCAACAGCTA 1.76 647-650 P76 196463 Hs_LOC196463_4 CTGGATGAACACGGTGGTGAA CAGGCTGATGAGGTACAATGA GTGGATGATCGTGGACTACAA CTGGAAGTTCGCGCCTGTCAA 1.48 651-654 PCDH18 54510 Hs_PCDH18_4 CTGAGTATAGTTTGACTGTAA CCCGAAGCAACTGGTAAGCAA CTGCGCCATAGTAGCAGGTAA CCGGAGAATATTTCTCTCACA 1.6 655-658 PHF2 5253 Hs_PHF2_6 TTGAACATTTATATAATCTAA TCGCCTCTAGCTGGAAACAAA AGGACCGCTTATTCCACTTTA CCGCATCGTCTCCAAACAACA 1.72 659-662 PIK3R5 23533 NA ATCGCAGATCAAAGTGGACAA TAGGATCCTTTCTAGAAGGAA CAGGATCTATAAACTCTTCAA NA 1.83 663-665 PIL3R5 23533 NA ATCGCAGATCAAAGTGGACAA TAGGATCCTTTCTAGAAGGAA CAGGATCTATAAACTCTTCAA NA 1.83 663-665 PIK3R6 146850 Hs_C17orf38_6 TCGCTGGACAAGGACGATCAA CACCTTCAGGACGAACAATAT CAGGGATGTGGTCAGATTCGA TCGCCGCACCCTGGAGCACTA 1.7 666-669 PIN1 5300 Hs_PIN1_4 GACCGCCAGATTCTCCCTTAA CAGTATTTATTGTTCCCACAA CAGGCCGAGTGTACTACTTCA CGGCTACATCCAGAAGATCAA 1.66 670-673 PKHD1 5314 Hs_PKHD1_7 CACCGGCATATTGGAAGTGTA CACGAGATAGCTGTACTTTCA CTGATGAGTATTGAAGTACTA CAAGATTACTGAGATACGGAA 1.66 674-677 PKN1 5585 Hs_PKN1_8 CCGCAAGGAGCTGAAGCTGAA CCGGAGCAGCCTCAAAGCAGA CACGGGTGACATATCGGTGGA CTCGGACAGCTCACCTCAGAA 1.64 678-681 PLAU 5328 Hs_PLAU_4 CTGCCTGCCCTCGATGTATAA CAGGGCTCTGATATTCCATGA TCGCTCAAGGCTTAACTCCAA AAGGCTTAACTCCAACACGCA 1.76 682-685 PLD2 5338 Hs_PLD2_6 CCGGCCTTTCGAAGATTTCAT CAGCCTGCTGACAGACACTAA TGGGCGGACGGTTCTGAACAA CAGCAAGGTGCTCATCGCAGA 1.78 686-689 PLK3 1263 Hs_PLK3_8 CAGAAAGACTGTGCACTACAA CTGCATCAAGCAGGTTCACTA CCCGCAGAGCCGCGTCGCCAA CAGCGCGAGAAGATCCTAAAT 1.6 690-693 POLK 51426 Hs_POLK_5 CAAGGATTTACCCATTAGAAA TAGGATGGGACTTAATGATAA AAGGATAAACCCATTGCTGTA TGGAATTAGAACAAAGCCGAA 1.85 694-697 POLR2H 5437 Hs_POLR2H_5 ATGGATCTAATCTTAGATGTA CAGGTCATGGGCATTGTTCAA AACATTCAAATTTACCCTGTA TTGAGTATGTAATGTATGGAA 1.39 698-701 POLR2L 544 Hs_POLR2L_4 AAGGTCTTTCAGAACCACTAA CTGGAAGGAACCATCCAGTAA CTGGGAGGTTGCCACTGCAAA CGGCAACAAGTGGGAGGCTTA 1.68 702-705 PPARA 5465 Hs_PPARA_5 TCGGCGAACGATTCGACTCAA CAGTGGAGCATTGAACATCGA CAAGAGAATCTACGAGGCCTA AAGCTTTGGCTTTACGGAATA 1.71 706-709 PPP1R14D 54866 Hs_PP1R14D_6 CCGCCTGACAGTGAAGTATGA CAGGAGCTCTTCCAGGATCAA AGGGACATTTGCATACTCCTA CACCCGGACTCCTCCAAGATA 1.72 710-713 PRDX5 25824 Hs_PRDX5_5 CAGCCAGGAGGCGGAGTGGAA CTGAGTGTTAATGATGCCTTT ATGGTGGTACAGGATGGCATA TGGGAAGGAGACAGACTTATT 1.87 714-717 PRPF8 10594 Hs_PRPF8_5 ACGGGCATGTATCGATACAAA ATGGCTTGTCATCCTGAATAA CAACGTCGTCATCAACTATAA CTCATCGTGGACCACAACATA 1.46 718-721 PRPS1 5631 Hs_PRPS1_5 AACATGCTTCCTGCTATGTAA CCCAAGGTCTATGCTAAATTA CACCATCTGCTTGACTATGTA CCGGGCGCCAATCTCAGCCAA 1.7 722-725 PRSS27 83886 Hs_PRSS27_2 CCCACCAGACTCATTTGTAAA ACCAGTGCCCTTCACCAATTA AATAATAATAATAATGAATGA CACCTCTGAGACGTCCCTGTA 1.82 726-729 PRX 57716 Hs_PRX_5 CAGGCTACTTCGAACCAGGAA CCGAGTGTTCTTCGAGAACTT GGCGGAGTTGGTGGAAATTAT CCCGCGGGCCAAGGTGGCCAA 1.87 730-733 PSENEN 55851 Hs_PEN2_3 CTCGCCCAAAGAAGACTACAA CTCCCAGGACAGGCTCCTTAA CGCGCAAACGTCCATAACTGA CAGAGCCAAATCAAAGGCTAT 1.72 734-737 PSMA1 5682 NA CTGCCTGTGTCTCGTCTTGTA CAGGGCAGGATTCATCAAATT CACAGTTGGTCTGAAATCAAA NA 1.72 738-740 PSMD2 5708 Hs_PSMD2_4 TGGGTGTGTTCCGAAAGTTTA CTCCGGAGGGCTGTACCTTTA CAGGGTTCCAGACGCATACAA TAGCGAACACTTTGACTCCAA 1.53 741-744 PTPLA 9200 HS_PTPLA_2 CACTGTTTAATTGGAATTGTA AAGTGAGTTCAAGAATCTTTA TTGAGATAGTTCACTGTTTAA AAGTATTCAGAAGACACTTAA 1.66 745-748 PTPRN 5798 Hs_PTPRN_6 CTGGTGAAGTCTGAACTGGAA CAGGAAGGTGAACAAGTGCTA CACGATGACCTCACCCAGTAT CCCTATGACCATGCCCGCATA 1.65 749-752 RAB4A 5867 Hs_RAB4A_9 AATGCAGGAACTGGCAAATCT CACACTTGAAATACTAGATCA AAGATGACTCAAATCATACAA CAGGTCCGTGACGAGAAGTTA 1.73 753-756 RAB6B 51560 Hs_RAB6B_6 ATCCATGTTCTTAGAGCCTCA ATGGCCAGAGTGGGTCGTCAA AACAATTAACTGAGCAAATTA CAGGGATCACATCACTCTTAA 1.59 757-760 RACGAP1 29127 Hs_RACGAP1_4 CACCACAGACACCAGATATTA CTGGTAGATAGAAGAGCTAAA CAGGTGGATGTAGAGATCAAA AGGATGAGTCATGGAATTTAA 1.56 761-764 RAX 30062 Hs_RAX_6 CAGGCTGAAGCTCCTAAACTT CCGCGAGGAGCTGGCCGGCAA ACCGGCGAAGCGAAACTGTCA CACGACTTTCACCACGTACCA 1.76 765-768 RBM42 79171 Hs_MGC10433_5 CCGCCCAATTATCGCGACCAA CCGCTTCCCATCCTTCCTTAA CTCCAGTACCTGGAATCCCAA GAGCATGTGGAAGGACCGGAA 1.63 769-772 RETN 56729 NA CAGGAGGTCGCCGGCTCCCTA CTCCATGGAAGAAGCCATCAA TCCCTAATATTTAGGGCAATA NA 1.77 773-775 RFFL 117584 Hs_RFFL_5 CCGGCTATACAAGGATCAGAA ATCGGTTTCTTCAGTGCCTTA TCGCAACTTTGTCAACTACAA CTCCATGACATCTCTACCGAA 1.75 776-779 RNF150 57484 Hs_RNF150_7 AACCCGGAACTTGCAGAAATA AGACGTCATCTTTACTACTAA ATGGCAATGTCTCTCATCCAA CGCCTTCGTGAACATCACCTA 1.76 780-783 RPL35 11224 Hs_RPL35_4 CCGTGTTCTCACAGTTATTAA TGCAGCAATGGCCAAGATCAA CAGGAAATTCTACAAGGGCAA CGAGGAGAACCTGAAGACCAA 1.53 784-787 RPLP2 6181 Hs_RPLP2_4 CAGGTTATCAGTGAGCTGAA AAGGAGGAGTCTGAAGAGTCA CAGCGCCAAGGACATCAAGAA CAGCGTGGGTATCGAGGCGGA 1.38 788-791 RPS10 6204 Hs_RPS10_8 ACCGCGCATGCTCCTTCCTTT AACCGGATTGCCATTTATGAA GACATTTCTACTGGTACCTTA ACCAATGAGGGTATCCAGTAT 1.69 792-795 RPS14 6208 Hs_RPS14_9 CCATATCTTTGCATCCTTCAA TCGGGCGGATTGAGGATGTCA ATCACCGCCCTACACATCAAA TGGGATGAAGGTAAAGGCAGA 1.57 796-799 RPS16 6217 Hs_RPS16_6 ATGATTGAGCCGCGCACGCTA ACGCGGCAATGGTCTCATCAA TCGGACGCAAGAAGACAGCGA CCCGCGCTCGCTACCAGAAAT 1.49 800-803 RPS27A 6233 NA CTGACTTACTGTTTCAACAAA CTGGCTGTCCTGAAATATTAT TCGAGGTTGAACCCTCGGATA NA 1.46 804-806 RPS5 6193 Hs_RPS5_7 CTCGAACTCCTATGCCATTAA CGCGTGGTCTACGCCGAGTGA TTCCCAGCTGCTGCCCAATAA CAGGCTGTGTTCTCAGGATGA 1.33 807-810 RPS6KA6 27330 H_sRPS6KA6_9 CAGGTCCACAATATTCATACT TTGGATCATCTGCACCAATTA GGCGAGGTAAATGGTCTTAAA TTCATCGTGATCTTAAACCTA 1.82 811-814 RUNX1 861 Hs_RUNX1_2 CTCCCTTTCATGTTAATCAAA CAGGTCGTTCTTATCTAGAGA CAGGATACAAGGCAGATCCAA CCGCACCTTATCAATTGCAAA 1.82 815-818 SAFB 6294 Hs_SAFB_5 ACGGACTGTAGTAATGGATAA CTGCCATATTGTAGCTCAATA CCGAAGATGACTCGGATACAA AGGGTGCGTGAACGCAGTGAA 1.79 819-822 SCAF1 58506 Hs_R-A1_5 CTGGGCTCCATTGGCGTCAAA CTGGACGTATTTATGGCTCCA CACGGTGGGCCGGCTTGACAA CACGGCTACTGTGTTGGACAT 1.64 823-826 SCAMP4 113178 Hs_SCAMP4_5 ACCCGTGTTCATCTCATCCGA CAGGATGCTGTTGCTGTAGGA CAGCCTGCGCTGGTTGGTGAA CCCGTCAAATCTGTGCCTTAT 1.88 827-830 SCARB1 949 Hs_SCARB1_9 CCGATCCATGAAGCTAATGTA TAGGGAGAGGCTCGTCAACAA CACCGTGTCCTTCCTCGAGTA CAGCGAGATCCTGAAGGGCGA 1.41 831-834 SDC1 6382 Hs_SDC1_2 CAGGGCCTCCTGGACAGGAAA TCCGACTGCTTTGGACCTAAA CAGGTGCTTGCAAGATATCA CCGCAAATTGTGGCTACTAAT 1.75 835-838 SELPLG 6404 Hs_SELPLG_5 CAGCAATTTGTCCGTCAACTA ATGGAGATACAGACCACTCAA TCCATGGAACCTACTACCAAA CCGGAGACAGGCCACCGAATA 1.88 839-842 SERPINA6 866 Hs_SERPINA6_5 CAGCAGACAGATCAACAGCTA CAACAGCTATGTCAAGAATAA CACCAGCTTAGAAATGACTAT AGGGTTATGAACCCAGTGTAA 1.75 843-846 SERPINB2 5055 Hs_SERPINB2_7 CAGAAGGGTAGTTATCCTGAT AACCTATGACAAACTCAACAA CTGGAAAGTGAAATAACCTAT TGCGAGCTTCCGGGAAGAATA 1.73 847-850 SERPINE2 5270 Hs_SERPINE2_10 CTGGGAGGTATTGGAGGGAAA AACGCCGTGTTTGTTAAGAAT CGGCGTAAATGGAGTTGGTAA AACTCCTGTCTTGCTAGACAA 1.45 851-854 SEZ6L2 26470 Hs_SEZ6L2_9 TCCATGCTTGGAGAAGGACAA CAGGATCCACTATCAGGCCTA CCGGCTGCTTCT6CACTTCCAA CTCGCTGGATGAGGACAATGA 1.4 855-858 SF3A1 10291 Hs_SF3A1_5 CAGGATAAGACGGAATGGAAA CGCAAGGATTATGATCCCAAA CAGCATGTAGGTAGCGTCCTA CTCATTCAGGAGCGCTATGAA 1.63 859-862 SF3B1 23451 Hs_SF3B1_7 ACGATGACTATTCATCATCTA GACCGGGAAGATGAATACAAA AAGCATAGGCGGACCATGATA TACGAGTTTGCTTGGTCAGAA 1.65 863-866 SF3B14 51639 Hs_SF3B14_7 AACATTCGACTTCCACCTGAA AACAGCTTATGTGGTCTATGA AAGAATGCATGTGATCACCTA AAATATGGACCTATTCGTCAA 1.8 867-870 SFTPB 6439 Hs_SFTPB_4 CACGATGAGGAAGTTCCTGGA CCGACCTTTGATGAGAACTCA GCCCTGAGTTCTGGTGCCAAA CAGGATCTCTCCGAGCAGCAA 1.76 871-874 SIGMAR1 10280 Hs_OPRS1_5 CCGGCTTGAGCTCACCACCTA AGGGATATCCATGCTTATGTA CAGCGTCTTCCATTCCAGAAA TCCATCTGTCTGTTTCTATTA 1.45 875-878 SLC12A4 6560 Hs_SLC12A4_7 CAAGAACATGATGGAAATTGA TCCCGTGTTTCCGGTATGCAT CACGTCGAATGCCACTTTGAA CGCCGGCATGATCTACAAATA 1.44 879-882 SLC22A6 9356 Hs_SLC22A6_8 CACCTTGATTGGCTATGTCTA CACCGATGGCTGGATCTATGA CAGGACCAGTCCATTGTCCGA TGCCACTAGCTTTGCATACTA 1.87 883-886 SLC25A19 60386 Hs_SLC25A19_6 CTCCCTGTGATCAGTTACCAA CTCGTATGAATTCTTCTGTAA CAGGGTGAGCCCAAGGTCTAT TCCGCTGGACCTCTTCAAGAA 1.58 887-890 SLC4A8 9498 Hs_SLC4A8_5 AGCCGTCATTATTAACAGGAA GACGGCTATCTTAAAGTTTAT TGGGACCAGTACAATTCTCAA ATGATCGCGGATGGATTATTA 1.81 891-894 SLC7A1 6541 Hs_SLC7A1_4 GAGGGTTGGTTTATTATCAAA ACGGATCTGGATATACACTAT ACGCTTATGACTCCTAATGTA CAGCACCCAATAGACTATTTA 1.79 895-898 SMU1 55234 Hs_SMU1_6 TTGCACGAAGCTCGCATTGAA TAGGAGCCGTTAAGTATATAT AACAGTAAAGTGCTTCATATT TACGATGTTACGCAACCACTA 1.82 899-902 SNRP70 6625 Hs_SNRP70_5 AAGATTGAGCGGCGACAGCAA CTCCGGAGAATGGGTATTTGA CCGGAGAGAGTTTGAGGTGTA CTCCTCCAACTCGTGCTGAAA 1.59 903-906 SNRPF 6636 Hs_SNRPF_9 AAGGGCTATCTGGTATCTGTA TTGGCGGCCATTTCTCTTGAA GCCGTGGTTACGATGAGTTTA AAAGATTACTCACTGAACTAA 1.43 907-910 SNX6 58533 Hs_SNX6_3 AAGGTCTAGGTCACTAGTGGA CAGGCCGAAACTTCCCAACAA TAGACTAAACCAAGTATTGTA ACCGCGGACTTAAAGCAATAA 1.83 911-914 SNX9 51429 Hs_SNX9_4 CAGCCGCTTTCCAGTGATGTA ACAGATCTCAATGATGCAATA TCCAGTGGCTATCAAGGTGAA ATGGAATGTAATCACGAGTAT 1.54 915-918 SON 6651 Hs_SON_6 ATGATGTTGATTTATCTTTAA AAAGATATTCATCTTGATTTA CAGCGCTGGAATCCTATAATA TAGGTCTTTCGTGGTCAGTAA 1.31 919-922 SRRM2 23524 Hs_SRRM2_3 CGCCACCTAAACAGAAATCTA CCCGCCGTCGTTCAAGGTCTA CTCGATCATCTCCGGAGCTAA CAGGGATGTCTTCAAATCAGA 1.85 923-926 STAB1 23166 Hs_STAB1_4 CACGAAATACTCCTACAAGTA CACGCCAACTGTAGCCAGGTA CACCTCGTGCGCGGCCATCAA TAGGAACAATGGTCACTTGTA 1.48 927-930 SULF2 55959 Hs_SULF2_9 AGGGATGTCCTCAACCAGCTA ATGACAGATTCTGGAGGATAA TCGAAAGTGGCCAGAAATGAA CACATCGACCACGAGATTGAA 1.67 931-934 SUPT6H 6830 Hs_SUPT6H_8 TCAGTGTATGCTAGGCAACAA CTGCCGCATCATGAAGATTGA CAGGGTGATGTGATTATCCGA CTGCAAGGAACTGCCCGGCAA 1.51 935-938 TBL3 10607 Hs_TBL3_6 CCGTATCTGGAGAATGAACAA CTGCGTCACGTGGAACACCAA CCACGTTGTCGTGGCCTCCAA CTGGGACATCGTGCGGCACTA 1.75 939-942 TCF3 6929 NA CCCGGATCACTCAAGCAATAA GAGCGGAACCTGAATCCCAAA NA NA 1.71 943-944 TFE3 7030 Hs_TFE3_4 TCGCAGGCGATTCAACATTAA TCCGGGATTGTTGCTGACATA CAGCTCCGAATTCAGGAACTA AAGGAGATTGATGATGTCATT 1.82 945-948 TMEM50B 757 Hs_THEM50B_2 AATGGAGTAGATTGTACATTA ATGGAGTAGATTGTACATTA AAGGGATAATACATGATCAAA TTGGTGCATATGTTACCCAAA 1.77 949-952 TNFRSF18 8784 Hs_TNFRSF18_6 CAGGAGGGAGAGAGAGACACA CAGCAGAAGTGGGTGCAGGAA CTGCATGTGTGTCCAGCCTGA TGGGTCGGGATTCTCAGGTCA 1.58 953-956 TNK2 10188 Hs_TNK2_8 CAAGCTGCACATCCAGATGAA ACGCAAGTCGTGGATGAGTAA CGGCAGTCAGATCCTGCATAA TACCTGCTTCTTCCAGAGAAA 1.74 957-960 TRERF1 55809 Hs_TRERF1_8 CCGCAACAAATTCGCCCATCA AGAGTGGGTACTGTTCGGTAA CAGCGTATCTCCATGCAAGAA CTGCGGAAGCCTGTCAGGTTA 1.81 961-964 TRIM14 9830 Hs_TRIM14_7 CACCGAGAAGCTCAAGGCTAA CACGTGCAGAAACTCAGCCAA CTCAGATTACTACTTGACGAA GGCCAAGAAATTCATTGATAA 1.52 965-968 TRIM21 6737 Hs_TRIM21_8 CAGCAGCACGCTTGACAATGA CAGAGCATACCTGGAAATGAA CACGCAGAGTTTGTGCAGCAA CTGGATATTACCTCTCCAGAA 1.69 969-972 TRIM60 166655 Hs_TRIM60_8 GAGCCCTTGAGGAATAATATA TTGCGTCAGGTCCTAAGACAA AAGGATCTAGATGATACCTTT AGCTCCGTAATTTGACTGAAA 1.78 973-976 TSSK6 83983 Hs_TSSK6_1 CCGGTTGGAACCTGCAATAAA CAAGGGTACCGTGGCCATCAA CGCAGTCACTTCACAAGGCAA GAAGGTGGCCACATCCAAGAA 1.56 977-980 TUBB4 10382 Hs_TUBB4_5 CTGCCTCACCCTCAATAAATA TGAGCCCTAATTTATCTTTAA CTCTGGAAACCGCACCTTTAA CTCGAGGCTTCTGACCTTTGA 1.77 981-984 TXNL4A 10907 Hs_TXNL4A_6 AAGGTTTACTCTGGTTATAAA CAGCATCGCCGAGAAGGTTAA ATGCCGCGAGCTGGGCTTTAA CAAGGACTACTCCAACCAAGTA 1.62 985-988 UBAC2 337867 NA CCGGCAGCTGATGTTCTCTCA TACATCTGGATTGTAGCCATA NA NA 1.89 989-990 UBE2N 7334 Hs_UBE2N_8 AAGATAGTACTGAATGGAGTA CTGGCCCTGAGCATGCATAAA TCCCAATTTGACAATCGTATT AGCAGTTGTGACTGACATGTA 1.78 991-994 VNN2 8875 Hs_VNN2_9 AACACACATCATGTCAGCCTA CAGCAATTCAGCAATAACTTA CTGAAGTGCTACTTACCGAAA CAGGATTACATGGCCGAAGGA 1.83 995-998 WNT3A 89780 Hs_WNT3A_3 ACCGCCATCCTCTGCCTCAAA GCCGCGCTACACCTACTTCAA CCCGACTGTGCTGCTCGCGAA CAGGAACTACGTGGAGATCAT 1.85  999-1002 WNT9A 7483 Hs_WNT9A_4 CCGGCTGAAGCTGGAGCGGAA CCGTGTGGACTTCCACAACAA CAAGTATGAGACGGCACTCAA CAGCAGCAAGTTCGTCAAGGA 1.4 1003-1006 XAB2 56949 NA CACGTACAACACGCAGGTCAA CCGCGTGTACAAGTCACTGAA CCGGACCTTGTCTTCGAGGAA NA 1.65 1007-1009 XPNPEP1 7511 Hs_XPNPEP1_4 AAGGAGAACCTCGTTGACAAA CCCGACTTCTTTGGCCAGTGA ATGAGATTGCGTGGCTATTTA CCCGACTGGAACCAAAGGTCA 1.74 1010-1013 XPO1 7514 Hs_XPO1_6 CCCATTGTAAAGCGACTTCAA TACATGTTACTCCCTAATCAA TTCTCAGAATATGAATACGAA ATGGTTAGTCGAATGGCTAAA 1.64 1014-1017 XRCC6 2547 Hs_G22P1_3 TTTGTACTATATACTGTTAAA AAGCTCTATCGGGAAACAAAT ACCGAGGGCGATGAAGAAGCA GAGGATCATGCTGTTCACCAA 1.42 1018-1021 siRNA2 siRNA3 siRNA4 siRNA1 siRNA2 siRNA3 siRNA4 Hits per siRNA1 siRNA2 siRNA3 siRNA4 Hits per GeneSymbol LocusID WST WST WST NPI WSN NPI WSN NPI WSN NPI WSN gene WSN NPI HH NPI HH NPI HH NPI HH gene HH AAMP 14 1.74 1.83 1.72 0.69 0.06 −0.33 0.02 0 0.87 0.07 0.4 0.97 2 ACTN1 87 1.64 1.68 1.9 −1.68 0.63 −0.42 0.13 0 1.03 0.97 0.26 −0.4 2 AHCYL1 10768 1.47 1.55 1.71 0.72 0.87 −0.15 0.73 1 0.8 0.82 0.17 0.32 2 AIG1 51390 1.87 1.87 1.78 0.97 0.74 0.83 0.81 3 −1.56 0.4 0.83 0.93 2 AKR1C4 1109 1.63 1.83 1.78 0.87 0.53 0.78 0.9 2 0.68 0.11 0.52 0.83 1 AKTIP 64400 1.68 1.81 1.76 0.96 0.58 0.38 0.17 1 0.98 0.6 0.29 1.06 2 ALDH7A1 501 1.61 1.9 1.87 0.88 1.01 0.74 0.84 3 0.83 0.9 −0.08 0.87 3 ALX4 60529 1.67 1.6 1.71 0.91 0.85 0.62 0.95 3 1.38 0.9 0.99 −0.85 3 AP2M1 1173 1.51 1.57 1.59 0.86 0.92 0.81 0.62 3 0.89 0.26 0.45 0.94 2 APBB1IP 54518 1.86 1.91 1.9 0.49 −0.5 0.47 0.28 0 0.98 0.62 −0.21 0.9 2 ARD1A 8260 1.83 1.72 1.88 1 0.99 0.87 0.86 4 1 1.05 0.92 1 4 ARTN 9048 1.38 1.63 1.68 0.8 0.96 −0.15 0.97 2 0.59 1.11 −0.45 −2.59 1 ASAH3L 340485 1.79 1.85 1.72 0.86 0.96 −0.88 0.6 2 0.9 0.85 0.51 0.81 3 ATCAY 85300 1.81 1.9 1.83 0.91 0.84 0.42 −1.46 2 0.08 1.13 0.44 1.04 2 ATP1A2 477 1.67 1.64 1.61 −0.04 1 0.76 0.87 2 0.35 0.83 0.64 −239.08 1 ATP6AP1 537 1.63 1.89 1.7 1 0.78 0.98 0.92 3 1.02 0.53 0.31 0.95 2 ATP6AP2 10159 1.87 1.93 1.84 0.8 0.67 0.83 0.49 2 1.01 0.74 0.98 0.93 3 ATP6V0C 527 1.91 1.88 1.85 0.75 0.91 0.96 0.96 3 1.33 1.22 1.11 1.03 4 ATP6V0D1 9114 1.46 1.84 1.78 0.84 0.75 0.89 0.46 2 0.6 1.14 1.23 1.1 3 ATP6V1A 523 1.93 1.91 1.86 0.89 −0.71 0.83 0.93 3 1.11 0.8 0.3 0.98 2 ATP6V1B2 526 1.55 1.8 1.89 0.88 0.8 0.46 0.99 2 1.25 1.13 −0.26 1.02 3 AZIN1 51582 1.82 1.86 1.69 0.53 0.94 0.92 0.47 2 0.31 1.32 0.8 0.7 1 B2N 567 1.35 1.57 1.59 1 0.05 0.09 0.99 2 0.85 0.88 −0.38 1.02 3 B3GNT1 11041 1.53 1.56 1.7 0.87 0.91 −2.1 0.81 3 0.38 −1.6 −1.1 0.98 1 BAIAP3 8938 1.78 1.77 1.84 0.56 0.43 −0.87 −1.03 0 0.66 0.81 0.87 0.85 3 BARHL2 343472 1.9 1.88 1.82 −0.19 0.32 0.81 0.64 1 0.12 −0.6 1.25 1.17 2 BNIP3L 665 1.65 1.8 1.87 0.87 −0.67 0.72 0.92 2 0.72 0.95 0.66 0.98 2 BRUNOL6 60677 1.88 1.88 1.77 0.12 −0.66 0.87 0.83 2 −0.01 −4.07 1.38 1.32 2 BZRAP1 9256 1.63 1.55 1.86 0.8 0.99 0.99 0.96 4 0.96 1 1.04 −0.45 3 C14orf172 115708 1.8 1.91 1.79 0.83 0.86 0.56 0.87 3 0.82 0.43 0.85 −0.18 2 C19orf47 126526 1.57 1.58 1.73 −0.47 0.85 0.86 0.98 3 0.44 0.9 −0.36 0.93 2 C21orf7 56911 1.57 1.62 1.58 0.51 0.44 −0.51 0.38 0 0.91 0.85 −0.22 0.94 3 C3orf31 132001 1.63 1.72 1.73 0.65 0.89 −0.59 −3.54 1 1.01 0.99 0.7 0.47 2 C4orf29 00167 1.53 1.68 1.64 0.67 0.78 0.09 0.98 1 −1.47 1.04 −1.21 1.01 2 CARD9 64170 1.81 1.87 1.61 0.71 0.49 −1.44 0.49 0 0.86 −2.13 1.23 0.44 2 CASP8AP2 9994 1.88 1.9 1.83 0.8 0.96 0.53 0.82 2 0.55 0.84 0.81 −0.75 2 CCNB3 85417 1.52 1.49 NA 1 0.52 −0.67 NA 2 0.73 0.85 −0.7 NA 1 CD48 962 1.48 1.37 1.64 −0.14 0.63 0.62 −0.72 0 0.18 0.7 0.85 1.08 2 CD58 965 1.88 1.84 NA 0.8 0.89 0.98 NA 2 0.87 0.77 0.97 NA 2 CD6 923 1.83 1.83 1.8 0.93 0.81 0.48 0.92 3 1.01 0.6 0.95 0.89 3 CD63 967 1.79 1.86 1.81 0.81 −0.38 −0.13 −0.73 1 −0.11 0.1 1.21 0.85 2 CD81 975 1.36 1.53 1.64 −0.57 −0.15 0.35 0.73 0 0.85 0.66 0.38 1.00 2 CDC23 8697 1.59 1.85 1.52 0.78 0.99 −0.25 1 2 0.64 0.38 −0.04 0.74 0 CDK4 1019 1.62 1.88 1.87 0.76 0.96 0.23 1 2 0.53 −0.27 0.86 0.99 2 CDKN1B 1027 1.89 1.88 1.84 0.75 0.84 0.74 0.62 1 0.64 0.7 0.91 1.08 2 CEL 1056 1.72 1.56 1.52 0.66 0.72 0.7 0.86 0 0.17 1.01 0.99 −0.54 2 CHST5 23583 1.45 1.48 1.44 0.99 0.58 0.04 1 2 0.5 1.02 0.94 −1.5 2 CIB3 117286 1.52 1.61 1.84 0.85 0.88 0.68 0.81 2 −1.57 0.82 1.1 0.21 2 CLIC4 25932 1.77 1.68 1.62 −0.41 0.68 −0.28 −0.29 0 −1.85 0.94 0.05 1 2 CLK1 1195 1.92 1.89 1.85 0.84 0.58 0.88 0.51 2 0.9 0.82 6.89 0.87 1 CNNM1 26507 1.76 1.71 1.39 0.88 0.17 0.28 −1.88 1 0.86 1 −8.59 0.43 2 COPA 1314 1.75 1.8 NA 1 1 1 NA 3 1.01 1.05 1.05 NA 3 COPB1 1315 1.65 1.74 NA 0.97 1 0.99 NA 3 0.85 1 −2.35 NA 1 COPB2 9276 1.48 1.43 1.63 1 1 1 1 4 0.16 1.01 0.98 1 3 COPG 22820 1.3 1.66 1.67 0.91 0.07 0.22 1 3 0.9 0.94 0.22 1.16 3 CRAMP1L 57585 1.5 1.85 1.81 0.6 0.69 0.7 0.57 0 0.82 0.93 0.75 1 3 CRYAA 1400 1.7 1.76 1.77 0.95 0.92 0.59 0.49 2 0.73 −0.26 0.48 0.9 1 CTA-216E10.6 19640 1.51 1.71 1.74 0.51 0.99 0.19 1.01 2 0.25 1.04 0.28 −0.35 1 CUEDC2 79004 1.5 1.33 1.5 0.78 1 0.82 0.89 3 1.16 0.48 1.00 0.29 2 CXCR6 10663 1.79 1.8 1.83 −1.15 1 1 0.9 3 0.42 0.47 0.15 0.21 0 CYC1 1537 1.47 1.7 1.84 −0.93 0.39 0.85 0.93 2 0.18 0.5 1.1 0.36 1 CYP17A1 1586 1.89 1.84 1.82 −1.63 0.92 0.18 0.88 2 −1.89 1.84 −0.27 0.82 2 CYP2U1 113612 1.58 1.46 1.49 −0.12 0.47 0.91 0.6 1 −2.14 1 1 −2.33 2 DBT 1629 1.36 1.63 1.67 0.77 1 1 0.93 3 1.02 0.92 −2 1 3 DCLK2 166614 1.58 1.68 1.65 0.95 0.95 −0.01 0.95 3 1.02 −0.51 0.66 −0.16 1 DGKH 160851 1.37 1.53 1.63 −0.51 −0.23 0.63 0.92 1 −0.44 0.98 −4.95 1.02 2 DGUOK 1716 1.67 1.7 1.76 0.56 0.72 0.86 0.98 2 0.04 −1.78 0.7 0.37 0 DHRS2 10202 1.78 1.77 1.64 0.8 0.11 0.93 0.68 2 0.33 0.18 0.43 −0.23 0 DLG2 1740 1.79 NA NA 0.91 1 NA NA 2 −2.41 0.98 NA NA 1 DMAP1 55929 1.87 1.91 1.82 1.61 0.48 −0.69 0.68 1 0.82 0.11 0.02 0.9 3 DMRT1 1761 1.93 1.92 1.71 0.91 0.94 0.94 0.6 3 0.98 0.73 −1.2 0.73 1 DTX3 196403 1.75 1.67 1.67 0.84 0.68 0.91 0.98 3 0.8 −17.71 0.84 1.01 2 DUSP27 92235 1.81 1.7 1.54 0.63 −0.48 −0.50 0.97 1 0.8 0.8 −17.12 0.89 2 E2F1 1869 1.76 1.9 1.74 0.87 0.75 −0.81 0.79 2 0.29 0.03 1.01 −4.6 1 EEF1A1 1915 1.75 1.87 1.64 0.93 0.05 0.29 0.77 1 0.6 0.94 0.79 0.9 2 EIF3A 8661 1.72 1.75 1.69 1 1 0.98 0.93 4 1 1 1.05 −6.63 3 EIF3C 8663 1.52 1.36 1.44 0.88 0.96 0.99 0.98 4 0.82 −0.94 0.58 0.53 1 EIF3G 8666 1.47 1.63 NA −0.71 0.95 0.99 NA 2 −0.14 −1.61 0.99 NA 1 EIF4A3 9775 1.77 1.71 1.77 0.98 0.63 0.91 0.61 2 0.98 0.23 1.19 0.98 3 ENGASE 64772 1.53 1.47 1.64 0.86 0.93 −0.05 0.17 2 −0.62 −0.24 0.73 −0.98 0 EPB49 2039 1.72 1.86 1.79 0.9 0.63 0.10 −0.84 1 0.98 0.94 0.77 0.28 2 EPHB6 2051 1.77 1.94 1.85 0.97 0.98 0.39 0.89 3 0.32 −0.66 0.59 −0.12 0 ERN2 10595 1.42 1.75 1.86 −0.04 0.61 0.95 0.49 1 0.57 0.81 1.02 0.95 3 FAU 2197 1.45 1.49 NA 1 1 1 NA 3 0.28 1.02 0.64 NA 1 FBXW10 10517 1.45 1.48 1.66 −1.32 0.17 −2.43 0.88 1 0.83 0.94 0.9 0.38 3 FCHO2 115548 1.43 1.69 1.82 0.94 0.94 0.45 0.59 2 −1.75 −0.56 −0.86 −1.94 0 FCRL6 343413 1.65 1.86 1.75 0.78 0.95 0.32 0.32 1 1.02 1.1 1.88 0.86 4 FERMT3 83706 1.73 1.73 1.75 0.51 −0.36 0.86 −0.25 1 −0.35 −0.71 0.89 0.86 2 FGF3 2248 1.57 1.79 1.81 0.22 0.98 0.96 0.88 3 0.87 0.64 0.99 0.04 2 FLJ11235 54508 1.85 1.85 1.82 0.95 1 0.76 0.77 2 1 0.28 0.93 0.95 3 FLJ20489 55652 1.65 1.74 1.86 −1.1 0.76 0.75 −1.8 0 0.82 0.8 0.93 1.15 3 FLJ34077 484033 1.74 1.81 1.6 0.61 0.44 0.42 0.94 1 0.23 −0.1 1.86 1.35 2 FNTB 2342 1.82 1.92 1.81 0.94 0.9 0.77 0.35 2 0.6 −1.3 0.98 0.08 1 G6PC 2538 1.57 1.85 1.85 0.85 0.95 0.73 0.98 3 0.2 0.5 0.02 0.67 0 GCLC 2729 1.78 1.83 1.83 1 0.36 0.77 0.39 1 1.02 0.6 0.99 0.89 3 GNMT 27232 1.78 1.8 1.74 0.96 0.03 0.87 0.01 2 1.02 −5.16 0.99 1.19 3 GNRH2 2797 1.64 1.85 1.9 0.71 0.93 0.73 0.99 2 0.86 1 0.7 0.94 3 GPR146 115330 1.55 1.61 1.7 −0.06 0.57 0.09 −0.25 0 1.02 −3.24 0.96 −0.35 2 GRID2 2895 1.8 1.81 1.85 0.96 0.11 0.59 −0.3 1 1.3 0.71 1.02 0.57 2 GRIN2C 2905 1.75 1.79 1.83 0.85 0.86 0.39 0.28 2 0.33 −47.73 0.64 0.92 1 GRP 2922 1.61 1.79 1.75 0.82 0.57 0.86 0.83 3 −0.33 0.73 0.89 0.56 0 GSK3A 2931 1.71 1.85 1.87 0.62 0.96 0.37 0.71 1 0.93 0.64 0.94 −0.69 2 HARBI1 9776 1.46 1.77 1.74 0.31 0.88 0.74 0.83 2 0.54 0.9 −1.17 0.48 1 HIBCH 26275 1.49 1.53 1.73 0.2 0.36 −0.29 0.11 0 1.06 0.8 −0.46 0.98 3 HIST1H2BN 8341 1.69 1.64 1.67 0.89 0.99 −1.17 −0.04 2 1 1 0.64 −0.01 2 HPGD 3248 1.77 1.83 1.83 0.47 0.38 0.93 0.19 1 1.02 0.28 0.9 0.94 3 HSF4 3299 1.86 1.72 1.81 0.99 0.91 0.84 0.86 4 0.81 10 −8.36 1.01 3 HSPD1 3329 1.53 1.71 1.67 0.93 0.97 −0.21 0.59 2 1.02 0.3 0.98 0.95 3 ICAM2 3384 1.89 1.9 1.85 0.98 0.94 0.46 0.21 2 0.95 −1.1 0.82 1.11 3 ICEBERG 59082 1.48 1.44 1.74 0.55 0.53 −0.7 0.39 0 1.02 0.94 −0.54 0.94 3 IL17RA 23765 1.81 1.8 1.78 1 0.03 −0.09 −0.05 1 1.04 0.48 1.01 −1.44 2 IL1A 3552 1.58 1.67 1.43 0.7 0.97 0.35 0.66 1 1 1 0.95 −4.12 3 IQCF2 389123 1.79 1.89 1.8 0.85 −0.26 0.57 −0.86 1 1.15 −0.37 1.19 0.35 2 IRF2 3660 1.6 1.59 1.80 0.12 0.95 −0.66 0.95 2 0.97 0.66 0.41 0.81 1 ISG15 9636 1.82 1.79 NA 0.85 0.49 0.97 NA 2 1 0.85 0.21 NA 2 ITLN1 55600 1.74 1.77 1.72 0.91 0.99 0.89 0.59 3 0.59 0.86 1.02 0.71 2 JARID1D 8284 1.85 1.89 1.75 0.02 −0.43 0.6 0.56 0 0.29 0.1 0.83 1.26 2 JUN 3725 1.47 1.57 1.52 0.81 1 0.57 0.97 2 0.75 0.99 1.01 0.65 2 KATNB1 10300 1.38 1.38 1.55 0.73 0.96 −0.26 0.7 1 0.9 0.97 0.35 0.31 2 KCNAB3 9196 1.01 1.87 1.71 0.91 0.79 0.99 0.18 2 0.53 0.13 −0.12 0.88 1 KCNJ12 3768 1.85 1.34 1.49 −1.52 0.55 0.74 −0.41 0 0.97 1.01 1 0.73 3 KIAA0664 23277 1.71 1.7 1.75 0.97 −0.14 0.83 0.18 2 −0.16 −0.20 0.86 −10.73 1 KIAA0947 23379 1.83 1.9 1.67 0.73 0.99 0.49 0.1 1 0.82 1.01 −1 0.94 3 KIAA1128 54462 1.87 1.91 1.83 0.46 0.85 0.68 0.53 0 0.48 0.82 0.1 1.32 2 KIAA1267 284058 1.98 1.0 1.74 0.86 0.41 0.89 0.4 2 0.88 0.94 0.62 −0.06 2 KIF11 3832 1.42 1.46 1.76 1 0.88 0.96 −0.35 3 −.21 0.32 1 0.04 1 KIF23 9493 1.9 1.91 1.72 0.98 0.86 −0.13 0.93 3 0.91 0.42 0.52 0.7 1 KIF3A 11127 1.43 1.54 1.46 −0.00 0.82 0.34 1 2 0.44 1.02 0.54 1.35 2 KPNB1 3837 1.71 1.84 1.68 0.9 0.98 0.98 0.91 4 0.85 1.11 0.91 1.05 4 LAMC2 3918 1.62 1.59 1.89 0.76 0.9 0.72 0.77 1 1 0.7 0.99 0.85 3 LARP1 23367 1.54 1.7 1.66 0.97 1 0.98 0.79 3 −2.57 1 0.98 0.83 3 LHX3 8022 1.71 1.72 1.5 1 1 0.84 0.99 4 1 −3.65 0.58 0.96 2 LINGO1 84894 1.60 1.72 1.52 0.88 0.99 −0.72 0.64 1 0.42 1 0.88 −1.74 2 LOC162993 162993 1.79 1.01 1.75 0.70 0.32 −0.21 −0.57 0 1.19 0.98 −2.52 0.94 3 LOC399940 399940 1.32 1.58 1.73 0.66 −1.57 0.37 0.38 0 0.31 0.98 −0.23 1.07 2 LOC401431 401431 1.65 1.36 1.7 −1.91 1 −0.33 0.45 1 −0.21 0.87 0.56 1.04 2 LOC440733 440733 1.64 1.58 1.71 −0.67 0.84 −0.12 0.45 1 0.73 0.94 0.76 0.8 2 LPPR4 9890 1.86 1.78 1.78 0.93 1 −1.09 0.85 3 0.89 1 0.71 0.92 2 MAN2B1 4125 1.81 1.02 1.81 0.94 1 0.88 −1.08 3 −0.23 0.5 0.84 −0.41 1 MAP2K3 5606 1.65 1.0 1.87 0.87 0.83 0.28 0.83 3 0.51 0.4 −1.89 −0.65 0 MATN3 4148 1.75 1.82 1.75 0.38 0.78 0.62 0.64 0 −2.05 0.87 0.87 0.31 2 MED6 10001 1.54 1.53 1.71 1 0.98 1 0.96 4 0.62 0.92 1 1 3 MKL1 57591 1.58 1.73 1.87 0.86 0.7 0.64 0.71 1 0.37 0.88 0.89 0.95 2 MRPS12 6183 1.82 1.80 1.78 0.85 0.8 0.98 0.3 3 0.19 −0.13 0.23 −0.66 0 MYC 4609 1.72 1.76 1.63 0.96 0.66 1 0.83 3 0.85 0.99 1 −2.51 3 MYEF2 50894 1.86 1.9 1.85 0.9 0.87 −0.05 0.59 2 −3.19 −0.05 −5.79 0.75 0 MYOD1 4654 1.67 1.69 1.7 −0.89 0.86 0.87 0.67 2 −0.12 0.08 −9.36 −15.75 0 NAE1 8883 1.82 1.85 1.72 0.86 0.88 0.83 0.97 4 −1.3 −155.63 0.8 0.44 1 NDUFV3 4731 1.51 1.5 1.68 0.48 0.9 0.37 0.88 2 −1.67 1.02 0.56 −0.49 1 NECAP2 55707 1.88 1.01 1.85 0.96 −0.91 0.89 −0.27 2 1.1 0.18 1.29 0.6 2 NEK8 284086 1.7 1.57 NA 0.93 0 −0.02 NA 1 1 0.64 0.88 NA 3 NEK9 91754 1.77 1.04 1.79 0.66 −1.3 0.83 0.94 2 0.51 0.46 0.99 0.46 1 NSF 4905 1.94 1.9 1.74 0.48 0.55 0.48 0.83 1 0.82 0.28 0.9 0.53 2 NTHL1 4913 1.84 1.83 1.71 0.48 0.86 −0.11 0.67 1 1.2 0 1.02 0.69 2 NUP205 23165 1.57 1.79 1.79 0.53 0.98 −2.15 0.88 2 1.13 0.92 0.6 0.96 4 NUP98 4928 1.83 1.87 1.8 0.98 0.93 0.01 0.99 4 1.28 1.11 1.14 1.24 4 NXF1 10482 1.57 1.55 1.64 0.92 0.94 1 1 4 1.21 1.81 1.17 1.25 4 ODZ4 26011 1.85 1.89 1.84 0.38 0.74 0.73 0.38 0 0.53 1.25 1.2 0.02 2 OPN1SW 611 1.84 1.79 1.87 0.86 0.95 0.18 −.71 2 0.96 1.81 0.74 0.7 2 P76 196463 1.44 1.4 1.66 0.13 0.89 −0.36 −1.38 1 1.15 0.98 0.81 0.42 3 PCDH18 54510 1.66 1.68 1.65 0.16 0.68 0.97 0.91 2 −1.01 0.2 1.01 0.25 1 PHF2 5253 1.82 1.89 1.68 0.07 0.97 0.75 0.99 3 −0.23 1.05 0.07 −0.4 1 PIK3R5 23533 1.84 1.88 NA 0.98 −0.7 0.83 NA 2 0.99 −3.35 0.1 NA 1 PIK3R6 146850 1.65 1.73 1.68 −0.11 0.99 0.63 0.96 2 −0.63 1.1 0.26 0.42 1 PIN1 5300 1.65 1.72 1.51 0.95 0.9 1 0.61 3 −.59 1 0.77 0.46 1 PKHD1 5314 1.48 1.76 1.03 −1.01 0.8 −1.25 −0.14 0 0.7 1.13 0.89 −1.49 2 PKN1 5585 1.53 1.69 1.32 0.9 0.97 0.59 1 3 0.7 0.5 −1.9 0.78 0 PLAU 5328 1.78 1.84 1.69 0.98 0.92 0.51 0.83 3 0.87 0.33 1.24 −0.3 1 PLD2 5338 1.83 1.9 1.83 0.32 0.97 0.64 0.52 1 1.01 1.09 −0.66 −0.27 2 PLK3 1263 1.82 1.76 1.81 0.79 0.01 0.45 −0.67 0 1.2 1.07 0.97 −1.89 3 POLK 51426 1.69 1.66 1.81 0.78 0.55 0.96 0.78 1 1.18 0.36 0.87 0.7 2 POLR2H 5437 1.43 1.79 1.65 0.95 0.82 0.65 0.94 3 1.02 1.05 0.56 0.61 2 POLR2L 544 1.59 1.78 1.72 0.65 0.94 −0.15 0.58 1 0.8 0.92 0.51 0.46 2 PPARA 5465 1.85 1.9 1.84 0.54 0.38 0.68 0.75 0 −6.98 0.57 0.81 0.91 2 PPP1R14D 54866 1.82 1.76 1.85 0.93 0.84 0.56 0.74 2 0.77 0.58 0.02 0.07 1 PRDX5 25824 1.62 1.74 1.87 −0.3 0.62 0.12 0.1 0 1.01 0.99 0.21 0.12 2 PRPF8 10594 1.6 1.67 1.74 0.66 0.65 0.96 0.83 2 1.09 0.29 1.29 1.88 3 PRPS1 5631 1.79 1.67 1.76 0.91 0.99 0.9 1 4 0.98 0.37 0.00 0.94 3 PRSS27 83886 1.88 1.78 1.78 0.06 1 0.79 0.02 2 0.99 0.9 0.93 0.5 3 PRX 57716 1.85 1.88 1.86 1.01 0.07 0.85 −1.64 2 1.21 −0.35 0.97 −1.56 2 PSENEN 55851 1.62 1.74 1.87 0.93 1 0.28 0.36 2 1.84 1.07 0.07 1.24 3 PSMA1 5682 1.56 1.79 NA 0.94 0.71 0.97 NA 2 0.77 1.03 −1.2 NA 1 PSMD2 5708 1.34 1.47 1.27 0.98 0.94 0.99 NA 3 −5.45 −0.07 1.02 NA 1 PTPLA 9200 1.52 1.82 1.75 0.92 0.82 0.41 0.87 3 0.02 1.01 0.5 0.66 1 PTPRN 5798 1.76 1.86 1.82 0.98 0.67 0.34 −1.40 2 1.26 0.86 −0.37 −0.75 2 RAB4A 5867 1.89 1.84 1.78 0.81 0.85 0.72 0.66 3 −1.67 0.44 −0.3 0.33 0 RAB6B 51560 1.58 1.59 1.8 0.75 0.94 0.41 −0.07 1 1.24 0.43 1.13 1.13 3 RACGAP1 29127 1.64 1.54 1.88 0.33 −0.25 0.69 −0.48 0 1.24 0.5 0.97 −0.21 2 RAX 30062 1.66 1.9 1.82 0.98 0.81 0.57 0.14 2 1.25 0.57 1.00 0.51 2 RBM42 79171 1.78 1.89 1.83 0.73 0.4 −0.23 0.05 0 1.11 0.99 −0.75 1.1 3 RETN 56729 1.83 1.8 NA 0.87 0.83 0.86 NA 3 0.9 −1.57 0.99 NA 2 RFFL 117584 1.68 1.92 1.88 0.91 0.97 0.42 −0.18 2 0.69 0.87 −0.8 0.77 1 RNF150 57484 1.7 1.82 1.68 0.37 0.49 −0.47 0.59 0 0.9 0.99 −0.32 0.95 3 RPL35 11224 1.61 1.48 1.31 0.98 0.96 0.98 0.96 4 1 0.1 0.5 0.55 1 RPLP2 6181 1.31 1.33 1.49 0.86 0.97 0.87 0.99 4 1.26 1.00 1.2 1.04 4 RPS10 6204 1.59 1.55 1.67 1 0.88 0.95 0.98 4 0.85 −0.26 0.8 −0.43 1 RPS14 6208 1.85 1.73 1.55 1 0.96 −0.06 1 3 0.97 −0.29 0.49 0.02 2 RPS16 6217 1.51 1.76 1.49 0.98 0.96 0.02 0.99 3 0.82 0.9 0.42 0.7 2 RPS27A 6233 1.39 1.42 NA 1 1 0.87 NA 3 0.74 0.98 0.47 NA 1 RPS5 6193 1.31 1.3 1.2 0.85 1 0.93 NA 3 0.98 1 0.17 NA 2 RPS6KA6 27330 1.75 1.9 1.69 0.17 0.92 0.96 0.1 2 −1.26 0.95 0.4 0.69 1 RUNX1 861 1.86 1.92 1.84 0.84 −0.15 0.73 0.16 1 0.91 0.87 0.95 −0.29 3 SAFB 6294 1.78 1.73 1.83 0.5 0.48 1 0.01 2 −5.89 1 0.82 0.82 3 SCAF1 58506 1.64 1.65 1.79 0.92 0.5 0.93 −0.02 2 1.01 0.02 −0.13 −0.03 1 SCAMP4 113178 1.82 1.87 1.37 0.68 0.96 0.97 0.66 2 0.1 0.57 1.35 1.02 2 SCARB1 949 1.32 1.52 1.77 0.94 0.99 0.27 0.71 2 0.17 −2.22 0.82 −0.2 1 SDC1 6382 1.64 1.62 1.63 −0.67 0.72 0.88 0.91 2 0.4 −0.08 0.91 0.36 1 SELPLG 6404 1.85 1.86 1.84 0.08 0.94 −0.74 0.53 1 −0.96 0.98 0.86 0.78 2 SERPINA6 866 1.53 1.83 1.88 0.57 0.95 0.95 0.78 2 0.28 0.34 −2.4 −0.75 0 SERPINB2 5055 1.73 1.83 1.76 0.64 −0.25 0.83 −0.38 2 0.34 0 0.12 0.15 0 SERPINE2 5270 1.45 1.54 1.83 0.75 0.89 0.41 0.85 2 1.2 0.8 0.3 0.4 1 SEZ6L2 26470 1.3 1.75 1.57 0.83 0.95 −0.43 0.93 2 0.6 −0.16 −1.49 1.00 1 SF3A1 10291 1.8 1.88 1.69 0.94 0.91 −0.65 0.84 3 1.10 0.24 0.65 0.8 2 SF3B1 23451 1.6 1.46 1.41 −0.03 0.99 1 1 3 0.13 1 0.98 0.46 2 SF3B14 51639 1.72 1.72 1.03 1 1 1 1 4 1.04 0.96 1 1.06 4 SFTPB 6439 1.82 1.84 1.5 0.29 0.97 0.87 0.99 3 0.59 0.7 0.16 0.45 0 SIGMAR1 10280 1.54 1.58 1.49 0.97 −0.75 0.56 0.36 1 1 1 0.8 0.7 2 SLC12A4 6560 1.69 1.66 1.8 0.44 0.68 0.82 0.98 2 −0.8 −0.16 0.35 0.74 0 SLC22A6 9356 1.75 1.87 1.85 −1.58 0.78 −0.6 0.91 1 0.87 0.09 0.61 0.91 2 SLC25A19 60386 1.48 1.72 1.63 0.95 0.44 −0.83 0.89 2 0.48 0.29 −0.57 −3.18 0 SLC4A8 9498 1.67 1.5 1.05 0.71 −0.02 0.27 −0.69 0 −0.24 0.9 0.83 0.5 2 SLC7A1 6541 1.73 1.84 1.83 0.16 0.74 −0.79 0.18 0 0.57 0.95 0.96 0.8 2 SMU1 55234 1.84 1.83 1.83 0.89 0.8 −0.42 −0.21 2 −0.96 0.79 −0.02 0.93 2 SNRP70 6625 1.84 1.65 1.71 0.23 0.88 −0.01 0.01 2 0.41 1.03 −0.22 0.91 2 SNRPF 6636 1.6 1.49 1.59 0.95 −2.32 0.99 0.61 3 −3.57 0.75 −2.57 −0.79 0 SNX6 58533 1.88 1.85 1.81 0.81 0.91 0.8 0.82 3 0.33 1.18 −0.93 0.91 2 SNX9 51429 1.83 1.89 1.83 0.89 0.36 0.3 0.55 1 1.27 1.13 0.24 1.2 3 SON 6651 1.31 1.32 1.21 0.94 0.94 0.89 NA 3 0.87 1.28 0.93 NA 3 SRRM2 23524 1.62 1.76 1.89 0.59 0.22 0.29 0.88 1 −0.04 0.97 1.13 0.87 3 STAB1 23166 1.47 1.55 1.47 0.98 1 0.95 0.92 4 1 −1.21 −2.27 0.36 1 SULF2 55959 1.79 1.87 1.85 0.01 0.67 0.93 0.95 2 0.87 0.67 0.7 0.51 1 SUPT6H 6830 1.50 1.62 1.64 −1.15 1 0.98 0.99 3 0.77 0.64 0.57 0.99 1 TBL3 10607 1.83 1.87 1.78 0.95 0.89 0.73 0.8 2 1.17 0.48 0.86 −11.7 2 TCF3 6929 1.72 NA NA 0.88 0.51 NA NA 1 1.82 1 NA NA 2 TFE3 7030 1.74 1.7 1.68 0.93 0.83 0.98 0.49 3 0.05 0.96 −0.21 0.38 2 TMEM50B 757 1.77 1.84 1.79 0.01 0.63 0.28 −0.44 0 0.25 0.91 1 0.95 3 TNFRSF18 8784 1.58 1.74 1.75 0.36 0.89 0.7 0.89 2 0.47 −0.05 0.55 0.51 0 TNK2 10188 1.87 1.9 1.81 0.55 0.96 0.91 0.13 2 1.06 1.25 0.7 0.06 2 TRERF1 55809 1.8 1.57 1.78 1 −1.72 1 0.96 3 1 0.75 1.02 0.82 3 TRIM14 9830 1.83 1.49 1.57 −0.2 0.49 0.07 0.89 1 0.63 0.01 0.76 1 2 TRIM21 6737 1.83 1.89 1.84 −1.27 0 0.38 0.64 0 0.43 0.84 −0.62 1.16 2 TRIM60 166655 1.83 1.82 1.83 −0.89 0.83 0.51 0.82 2 0.88 0.79 0.93 −1.02 2 TSSK6 83983 1.48 1.57 1.72 −0.44 0.55 −0.05 0.99 1 0.92 0.4 0.63 1.01 2 TUBB4 10382 1.84 1.87 1.81 0.9 0.94 0.88 0.78 3 0.94 −0.79 0.97 0.2 2 TXNL4A 10907 1.43 1.84 1.74 −0.72 0.95 −0.28 0.97 2 0.14 1.04 −1.89 0.87 2 UBAC2 337867 1.85 NA NA 1 0.88 NA NA 2 0.9 0.95 NA NA 2 UBE2N 7334 1.86 1.91 1.8 0.88 0.25 0.47 0.88 2 0.52 0.49 0.7 1.05 1 VNN2 8875 1.82 1.88 1.82 0.28 0.4 0.51 1 1 0.48 0.11 1.02 1.1 2 WNT3A 89780 1.91 1.87 1.77 0.36 −0.16 0.64 0.81 1 0.53 0.4 0.91 1.1 2 WNT9A 7483 1.53 1.62 1.45 1 0.55 0.01 1 2 1.02 −0.3 1 1 3 XAB2 56949 1.68 1.78 NA 0.95 1 0.92 NA 3 0.67 1.86 1.05 NA 2 XPNPEP1 7511 1.84 1.82 1.82 −0.34 0.97 0.42 0.92 2 0.8 0.99 −1.13 0.06 1 XPO1 7514 1.83 1.84 1.8 0.91 0.96 −0.37 0.28 2 0.87 0.86 0.48 0.79 2 XRCC6 2547 1.63 1.61 1.69 0.47 −0.46 0 −0.32 0 −0.27 1.13 0.84 −0.22 2

TABLE 4 GeneSymbol LocusID Gene Description siRNA1 ID siRNA2 ID siRNA3 ID siRNA4 ID ACTN1 87 ACTININ, ALPHA 1 Hs_ACTN1_13 Hs_ACTN1_8 Hs_ACTN1_7 Hs_ACTN1_4 ATP6AP2 10159 ATPASE, H+ TRANSPORTING, LYSOSOMAL Hs_ATP6AP2_7 Hs_ATP6AP2_8 Hs_ATP6AP2_6 Hs_ATP6AP2_4 ACCESSORY PROTEIN 2 ATP6V1B2 526 ATPASE, H+ TRANSPORTING, LYSOSOMAL Hs_ATP6V1B2_2 Hs_ATP6V1B2_4 Hs_ATP6V1B2_5 Hs_ATP6V1B2_6 56/58 KDA, V1 SUBUNIT B2 BNIP3L 665 BCL2/ADENOVIRUS E1B 19 KDA INTERACTING Hs_BNIP3L_7 Hs_BNIP3L_12 Hs_BNIP3L_10 Hs_BNIP3L_1 PROTEIN 3-LIKE BRUNO6 60677 BRUNO-LIKE 6, RNA BINDING PROTEIN (DROSO- Hs_BRUNOL6_8 Hs_BRUNOL6_7 Hs_BRUNOL6_5 Hs_BRUNOL6_9 PHILA) CUEDC2 79004 CUE DOMAIN CONTAINING 2 Hs_CUEDC2_5 Hs_CUEDC2_6 Hs_CUEDC2_4 Hs_CUEDC2_3 CYC1 1537 CYTOCHROME C-1 Hs_CYC1_1 Hs_CYC1_2 Hs_CYC1_3 Hs_CYC1_4 FNTB 2342 FARNESYLTRANSFERASE, CAAX BOX, BETA Hs_FNTB_7 FNTB_1 FNTB_7 FNTB_3 GCLC 2729 GLUTAMATE-CYSTEINE LIGASE, CATALYTIC SUB- Hs_GCLC_4 Hs_GCLC_7 Hs_GCLC_10 Hs_GCLC_11 UNIT GNRH2 2797 GONADOTROPIN-RELEASING HORMONE 2 Hs_GNRH2_8 Hs_GNRH2_7 Hs_GNRH2_6 Hs_GNRH2_5 GRIN2C 2905 glutamate receptor, ionotropic, N-methyl Hs_ GRIN2C_1 Hs_ GRIN2C_2 Hs_ GRIN2C_3 Hs_ GRIN2C_5 D-aspartate 2C GRP 2922 GASTRIN-RELEASING PEPTIDE Hs_GRP_6 Hs_GRP_9 Hs_GRP_8 Hs_GRP_7 HARBI1 9776 KIAA0652 Hs_KIAA0652_7 Hs_KIAA0652_3 Hs_KIAA0652_4 Hs_KIAA0652_5 HSPD1 3329 heat shock 60 kDa protein 1 (chaperonin) Hs_HSPD1_5 Hs_HSPD1_7 Hs_HSPD1_8 Hs_HSPD1_1 ICAM2 3384 INTERCELLULAR ADHESION MOLECULE 2 Hs_ICAM2_4 Hs_ICAM2_5 Hs_ICAM2_7 Hs_ICAM2_3 KCNJ12 3768 potassium inwardly-rectifying channel, Hs_KCNJ12_2 Hs_KCNJ12_4 Hs_KCNJ12_5 Hs_KCNJ12_6 KPNB1 3837 KARYOPHERIN (IMPORTIN) BETA 1 Hs_KPNB1_2 Hs_KPNB1_3 Hs_KPNB1_6 Hs_KPNB1_4 LAMC2 3918 LAMININ GAMMA 2 Hs_LAMC2_1 Hs_LAMC2_4 Hs_LAMC2_3 LOC440733 440733 similar to 40S ribosomal protein S15 (RIG Hs_LOC440733_11 Hs_LOC440733_12 Hs_LOC440733_13 Hs_LOC440733_14 MKL1 57591 MEGAKARYOBLASTIC LEUKEMIA (TRANSLOCATION) Hs_MKL1_1 Hs_MKL1_8 Hs_MKL1_6 Hs_MKL1_7 MRPS12 6183 MITOCHONDRIAL RIBOSOMAL PROTEIN S12 Hs_MRPS12_7 Hs_MRPS12_1 Hs_MRPS12_3 Hs_MRPS12_8 MYEF2 50804 MYELIN EXPRESSION FACTOR 2 Hs_MYEF2_4 Hs_MYEF2_5 Hs_MYEF2_8 Hs_MYEF2_3 NDUFV3 4731 NADH DEHYDROGENASE (UBIQUINONE) Hs_NDUFV3_3 Hs_NDUFV3_4 Hs_NDUFV3_5 Hs_NDUFV3_6 FLAVOPROTEIN 3, 10 KDA NECAP2 55707 NECAP ENDOCYTOSIS ASSOCIATED 2 Hs_FLJ10420_3 Hs_NECAP2_1 Hs_NECAP2_3 Hs_NECAP2_2 ODZ4 26011 odz, odd Oz/ten-m homolog 4 (Drosophila) Hs_ODZ4_2 Hs_ODZ4_3 Hs_ODZ4_4 Hs_ODZ4_5 PIK3R6 146850 CHROMOSOME 17 OPEN READING FRAM 38 Hs_C17orf38_3 Hs_C17orf38_4 Hs_C17orf38_5 Hs_C17orf38_6 PPARA 5465 PEROXISOME PROLIFERATIVE ACTIVATED Hs_PPARA_8 Hs_PPARA_7 Hs_PPARA_6 Hs_PPARA_5 RECEPTOR, ALPHA RAB4A 5867 RAB4A, MEMBER RAS ONCOGENE FAMILY Hs_RAB4A_5 Hs_RAB4A_11 Hs_RAB4A_10 Hs_RAB4A_9 SCAF1 58506 SERINE ARGININE-RICH PRE-MRNA SPLICING Hs_SR-A1_2 Hs_SR-A1_3 Hs_SR-A1_4 Hs_SR-A1_5 SCARB1 949 scavenger receptor class B, member 1 Hs_SCARB1_6 Hs_SCARB1_7 Hs_SCARB1_8 Hs_SCARB1_9 SERPINA6 866 SERPIN PEPTIDASE INHIBITOR, CLADE A Hs_SERPINA6_4 Hs_SERPINA6_3 Hs_SERPINA6_1 Hs_SERPINA6_5 (ALPHA-1 ANTIPROTEINASE, ANTITRYPSIN), MEMBER 6 SERPINE2 5055 serpin peptidase inhibitor, clade B Hs_SERPINE2_2 Hs_SERPINE2_5 Hs_SERPINE2_6 Hs_SERPINE2_7 (ovalbumin), member 2 SERPINE2 5270 SERPIN PEPTIDASE INHIBITOR, CLADE E Hs_SERPINE2_6 Hs_SERPINE2_1 Hs_SERPINE2_7 Hs_SERPINE2_10 (NEXIN, PLASMINOGEN ACTIVATOR INHIBITOR TYPE 1), MEMBER 2 SEZ6L2 26470 seizure related 6 homolog (mouse)-like 2 Hs_SEZ6L2_10 Hs_SEZ6L2_7 Hs_SEZ6L2_8 Hs_SEZ6L2_9 TBL3 10607 TRANSDUCIN (BETA)-LIKE 3 Hs_TBL3_4 Hs_TBL3_3 Hs_TBL3_5 Hs_TBL3_6 TRERF1 55809 transcriptional regulating factor 1 Hs_TRERF1_3 Hs_TRERF1_6 Hs_TRERF1_7 Hs_TRERF1_8 TRIM60 166655 tripartite motif-containing 60 Hs_TRIM60_3 Hs_TRIM60_6 Hs_TRIM60_7 Hs_TRIM60_8 TUBB4 10382 TUBULIN, BETA 4 Hs_TUBB4_2 Hs_TUBB4_3 Hs_TUBB4_6 Hs_TUBB4_5 Gene Locus sirRNA1 siRNA2 siRNA3 SEQ ID Symbol ID siRNA1Target siRNA2Target siRNA3Target siRNA4Target WST WST WST NOS.: ACTN1 87 AACACCATGCATGCCATGCAA CCGGCCCGAGCTGATTGACTA AAGGATGATCCACTCACAAAT AACGATTACATGCAGCCAGAA 1.74 1.64 1.68 1022-1025 ATP6AP2 10159 GGGAACGAGTTTAGTATATTA ATGTGCTTATATAATCGCTTA AACATGGATCCTGGATATGAT TCCCTATAACCTTGCATATAA 1.84 1.87 1.93 1026-1029 ATP6V1B2 526 CAGGCTGGTTTGGTAAAGAAA ACCATGTTACCCTGTAATTAA GAGGATATGCTTGGTCGGGTA CAGGGTAATCTTTGTGGCACA 1.55 1.55 1.8 1030-1033 BNIP3L 665 TAGCATTTGATGTCTAAATAA AAACGAGATCAGGTTAGCAAA CTGGGTGGAGCTACCCATGAA AAGAAAAGTGCGGACTGGGTA 1.63 1.65 1.8 1034-1037 BRUNO6 60677 CCCACCTGTAAAGTAGATTCA TACCTTCTGTCTCTTAGTCTA AAGCTGATCAATGGTGGTGAA CTGAAGGCCTCTGATCTGATA 1.87 1.88 1.88 1038-1041 CUEDC2 79004 CCCGACGGAGCAGAAGAGAGA CGGCCCGAAATGCTCAAAGAA TTGCTCCATAGTGTTAACCTA ATGCTGGTAGAGGGAAAGGAA 1.72 1.5 1.33 1042-1045 CYC1 1537 CCCATCATGGGAATAAATTAA CAGCATGGACTTCGTGGCCTA TACCATGTCCCAGATAGCCAA GCGGGAAGGTCTCTACTTCAA 1.8 1.47 1.7 1046-1049 FNTB 2342 CACGTCCATAGAACAGGCAAA ACCCACATATGCAGCAGTCAA CTCCGTAGCCTCGCTGACCAA TCCGCTCGCCGTAGCGCTTTA 1.67 1.82 1.92 1050-1053 GCLC 2729 CCGGATCATATTTACATGGAT CATCGACTTGACGATAGATAA CACCCTCGCTTCAGTACCTTA ATCAGGCTCTTTGCACAATAA 1.78 1.78 1.83 1054-1057 GNRH2 2797 CCCGCCATCCTCCAATAAAGT CTGAAGGAGCCATCTCATCCA TGGCTGGTACCCTGGAGGAAA CAGACTGCCCATGGCCTCCCA 1.83 1.64 1.85 1058-1061 GRIN2C 2905 CTGGACGAGATCAGCAGGGTA CCCAGCTTTCACTATCGGCAA CACCCACATGGTCAAGTTCAA GTCGATGTGCTTGCCGATCTA 1.75 1.75 1.79 1062-1065 GRP 2922 ATCAGTTCTACGGATCATCAA CCAGCTGAACCAGCAATGATA CAGAGGATAGCAGCAACTTCA CGGAGGGACCGTGCTGACCAA 1.75 1.61 1.79 1066-1069 HARBI1 9776 CTGGGCGTATGATTGACTTAA CAGGAAGTCCTGGGTGCTAAA CAGGTATTGTTACTTGAATAA AAGGCGGGAGTGACCCCTTAA 1.51 1.46 1.77 1070-1073 HSPD1 3329 AAGGCTTCGAGAAGATTAGCA CACCACCAGATGAGAAGTTAA CAGGGTTTGGTGACAATAGAA CGGGCTTATGCCAAAGATGTA 1.63 1.53 1.71 1074-1077 ICAM2 3384 CGGGAAGCAGGAGTCAATGAA TCCCATGACACGGTCCTCCAA CACGGTGGTCACTGGAACTCA AACATCTTTCACAAACACTCA 1.81 1.89 1.9 1078-1081 KCNJ12 3768 TTGGGTGAGACTGTTTACAAA TGCGAAGGATCTGGTAGAGAA CAGCTCCTACCTGGCCAATGA CTCGCACTTCCACAAGACCTA 1.64 1.65 1.34 1082-1085 KPNB1 3837 CAAGAACTCTTTGACATCTAA AAGGGCGGAGATCGAAGACTA CTGGAATCGTCCAGGGATTAA CTGGTACAACCCAGAGTAGAA 1.73 1.71 1.84 1086-1089 LAMC2 3918 CAGGCATATGGATGAGTTCAA CCCAATTGGTTTCTACAACGA CCGGACGGTGCTGTGGTGCAA TACTTTGAGTATCGAAGGTTA 1.64 1.62 1.59 1090-1093 LOC440733 440733 ATCATGATGGTTAGCCATTTA CAGCTGAAACTTTCTTGATCA AAAGAGCATTATCTAAGTAAT AACAACCTTTAGATATGCAAA 1.64 1.64 1.58 1094-1097 MKL1 57591 TAGTGTCTTGGTGTAGTGTAA AGCAAGATTGCCATCACGAAA AAGGGCCTGGATGCAAGGTTA ATCACGTGTGATTGACATGTA 1.67 1.58 1.73 1098-1101 MRPS12 6183 TTCCATCAGGACCACTATTAA CACGTTTACCCGCAAGCCGAA CCCACTCAGAGCGAGGCTAAA ACCCTGGCGCTTGTGATGTAA 1.61 1.82 1.88 1102-1105 MYEF2 50804 CAGAATAATGAATGGCATAAA ATCGATATGGATCGAGGATTT CTCGTAGGGCATTGCAGCGAA TCCTTTAATGTTGTAATTGAA 1.87 1.86 1.9 1106-1109 NDUFV3 4731 ACACTGATTATCCAACATATA ATCCATATAATTAGAGAATTT CCCGCTGTGCATAATCGGTTT CTGAGCCGTTTGACAACACTA 1.44 1.51 1.6 1110-1113 NECAP2 55707 AAGGAGCTCAGTAAACTAGAA CAGGTACTTCGTGATCCGCAT CAACATCGCAAACATGAAGAA CTGCAGCTTGAGCTACAATCA 1.8 1.88 1.81 1114-1117 ODZ4 26011 CCGGCCGGCCTTTAACCTCAA CCGCAGGGTGATATACAAGTA TCGGTTTATCCGGAAGAACAA CTGCGGGTTCACAACCGAAAT 1.81 1.85 1.89 1118-1121 PIK3R6 146850 TCGCTGGACAAGGACGATCAA CACCTTCAGGACGAACAATAT CAGGGATGTGGTCAGATTCGA TCGCCGCACCCTGGAGCACTA 1.7 1.65 1.73 1122-1125 PPARA 5465 TCGGCGAACGATTCGACTCAA CAGTGGAGCATTGAACATCGA CAAGAGAATCTACGAGGCCTA AAGCTTTGGCTTTACGGAATA 1.71 1.85 1.9 1126-1129 RAB4A 5867 AATGCAGGAACTGGCAAATCT CACACTTGAAATACTAGATCA AAGATGACTCAAATCATACAA CAGGTCCGTGACGAGAAGTTA 1.73 1.89 1.84 1130-1133 SCAF1 58506 CTGGGCTCCATTGGCGTCAAA CTGGACGTATTTATGGCTCCA CACGGTGGGCCGGCTTGACAA CACGGCTACTGTGTTGGACAT 1.64 1.64 1.65 1134-1137 SCARB1 949 CCGATCCATGAAGCTAATGTA TAGGGAGAGGCTCGTCAACAA CACCGTGTCCTTCCTCGAGTA CAGCGAGATCCTGAAGGGCGA 1.41 1.32 1.52 1138-1141 SERPINA6 866 CAGCAGACAGATCAACAGCTA CAACAGCTATGTCAAGAATAA CACCAGCTTAGAAATGACTAT AGGGTTATGAACCCAGTGTAA 1.75 1.63 1.83 1142-1145 SERPINB2 5055 CAGAAGGGTAGTTATCCTGAT AACCTATGACAAACTCAACAA CTGGAAAGTGAAATAACCTAT TGCGAGCTTCCGGGAAGAATA 1.73 1.73 1.83 1146-1149 SERPINE2 5270 CTGGGAGGTATTGGAGGGAAA AACGCCGTGTTTGTTAAGAAT CGGCGTAAATGGAGTTGGTAA AACTCCTGTCTTGCTAGACAA 1.45 1.45 1.54 1150-1153 SEZ6L2 26470 TCCATGCTTGGAGAAGGACAA CAGGATCCACTATCAGGCCTA CCGGCTGCTTCT6CACTTCCAA CTCGCTGGATGAGGACAATGA 1.4 1.3 1.75 1154-1157 TBL3 10607 CCGTATCTGGAGAATGAACAA CTGCGTCACGTGGAACACCAA CCACGTTGTCGTGGCCTCCAA CTGGGACATCGTGCGGCACTA 1.75 1.83 1.87 1158-1161 TRERF1 55809 CCGCAACAAATTCGCCCATCA AGAGTGGGTACTGTTCGGTAA CAGCGTATCTCCATGCAAGAA CTGCGGAAGCCTGTCAGGTTA 1.81 1.8 1.57 1162-1165 TRIM60 166655 GAGCCCTTGAGGAATAATATA TTGCGTCAGGTCCTAAGACAA AAGGATCTAGATGATACCTTT AGCTCCGTAATTTGACTGAAA 1.78 1.83 1.82 1166-1169 TUBB4 10382 CTGCCTCACCCTCAATAAATA TGAGCCCTAATTTATCTTTAA CTCTGGAAACCGCACCTTTAA CTCGAGGCTTCTGACCTTTGA 1.77 1.84 1.87 1170-1173 siRNA4 siRNA1 siRNA2 siRNA3 siRNA4 Hits per siRNA1 siRNA2 siRNA3 siRNA4 Hits per GeneSymbol Locus ID WST NPI WSN NPI WSN NPI WSN NPI WSN Gene WSN NPI HH NPI HH NPI HH NPI HH gene HH ACTN1 87 1.9 −1.68 0.63 −0.42 0.13 0 1.03 0.97 0.26 −0.4 2 ATP6AP2 10159 1.84 0.8 0.67 0.83 0.49 2 1.01 0.74 0.98 0.93 3 ATP6V1B2 526 1.89 0.88 0.8 0.46 0.99 2 1.25 1.13 −0.26 1.02 3 BNIP3L 665 1.87 0.87 −0.67 0.72 0.92 2 0.72 0.95 0.66 0.98 2 BRUNO6 60677 1.77 0.12 −0.66 0.87 0.83 2 −0.01 −4.07 1.30 1.32 2 CUEDC2 79004 1.5 0.78 1 0.82 0.89 3 1.16 0.48 1.08 −0.29 2 CYC1 1537 1.84 −0.93 0.39 0.85 0.93 2 0.18 0.5 1.1 0.36 1 FNTB 2342 1.81 0.94 0.9 0.77 0.35 2 0.6 −1.3 0.98 0.08 1 GCLC 2729 1.83 1 0.36 0.77 0.39 1 1.02 0.6 0.99 0.89 3 GNRH2 2797 1.9 0.71 0.93 0.73 0.99 2 0.86 1 0.7 0.94 3 GRIN2C 2905 1.83 0.85 0.86 0.39 0.28 2 0.33 −47.73 0.64 0.92 1 GRP 2922 1.75 0.82 0.57 0.86 0.83 3 −0.33 0.73 0.09 0.56 0 HARBI1 9776 1.74 0.31 0.88 0.74 0.83 2 0.54 0.9 −1.17 0.48 1 HSPD1 3329 1.67 0.93 0.97 −0.21 0.57 2 1.02 0.3 0.98 0.95 3 ICAM2 3384 1.85 0.98 0.94 0.46 0.21 2 0.95 −1.1 0.82 1.11 3 KCNJ12 3768 1.49 −1.52 0.55 0.74 −0.41 0 0.97 1.01 1 0.73 3 KPNB1 3837 1.68 0.9 0.98 0.98 0.91 4 0.85 1.11 0.91 1.05 4 LAMC2 3918 1.89 0.76 0.9 0.72 0.77 1 1 0.7 0.99 0.85 3 LOC440733 440733 1.71 −0.67 0.84 −0.12 0.46 1 0.73 0.94 0.78 0.8 2 MKL1 57591 1.87 0.86 0.7 0.64 0.71 1 0.37 0.68 0.89 0.96 2 MRPS12 6183 1.78 0.085 0.8 0.98 0.3 3 0.19 −0.13 0.23 −0.66 0 MYEF2 50804 1.85 0.9 0.87 −0.05 0.59 2 −3.19 −0.05 −5.79 0.75 0 NDUFV3 4731 1.68 0.48 0.9 0.37 0.88 2 −1.67 1.02 0.56 −0.49 1 NECAP2 55707 1.85 0.96 −0.91 0.89 −0.27 2 1.1 0.18 1.29 0.6 2 ODZ4 26011 1.84 0.38 0.74 0.73 0.36 0 0.53 1.25 1.2 0.02 2 PIK3R6 146850 1.68 −0.11 0.99 0.63 0.96 2 −0.63 1.1 0.26 0.42 1 PPARA 5465 1.84 0.54 0.38 0.68 0.75 0 −6.98 0.57 0.81 0.91 2 RAB4A 5867 1.78 0.81 0.85 0.72 0.88 3 −1.57 0.44 −0.3 0.33 0 SCAF1 58506 1.79 0.92 0.5 0.93 −0.02 2 1.01 0.62 −0.13 −0.63 1 SCARB1 949 1.77 0.94 0.99 0.27 0.71 2 0.17 −2.22 0.82 −0.2 1 SERPINA6 866 1.88 0.67 0.95 0.95 0.78 2 0.28 0.36 −2.4 −0.75 0 SERPINB2 5055 1.76 0.84 −0.25 0.83 −0.36 2 0.34 0 0.12 0.15 0 SERPINE2 5270 1.83 0.75 0.89 0.41 0.85 2 1.2 0.8 0.3 0.4 1 SEZ6L2 26470 1.58 0.03 0.95 −0.43 0.93 2 0.6 −0.16 −1.49 1.08 1 TBL3 10607 1.78 0.96 0.89 0.73 0.8 2 1.17 0.48 0.86 −11.7 2 TRERF1 55809 1.78 1 −1.72 1 0.96 3 1 0.75 1.02 0.82 3 TRIM60 166655 1.83 −0.89 0.83 0.51 0.82 2 0.98 0.79 0.93 −1.02 2 TUBB4 10382 1.81 0.9 0.94 0.88 0.78 3 0.94 −0.79 0.97 0.2 2 

The invention claimed is:
 1. A method of treating an influenza virus infection in a patient in need thereof, comprising administering to said patient an effective amount of a TNK2 inhibiting siRNA capable of inhibiting expression of at least one of SEQ ID NO: 957 and SEQ ID NO: 960 in said patient. 